Code

Get Package info#6

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Merged

AlexAxthelm merged 90 commits intofeat/1-export-manifestsRMI-PACTA/pacta.workflow.utils:feat/1-export-manifestsfrom get-environmentRMI-PACTA/pacta.workflow.utils:get-environmentCopy head branch name to clipboardApr 2, 2024

+948-3

Commits

Commits on Mar 18, 2024

• Add manifest creation datetime to output

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Commits on Mar 19, 2024

• add function to get environment information

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• Add test for session info

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• eliminate extra comma

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• Reindent

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• Add tests for local package info

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• Add test for package info from GH source

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• Add dependency on pak

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• linting

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Commits on Mar 20, 2024

• Change testing flow for local packages

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• add local R_USER_CACHE_DIR

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• Change from pak to pkgdepends fo package info

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• Capture PAK output to make tests easier to read

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• Sanitize package details before exporting

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• Add pak to testing deps

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• copy pak functions before messing with libpaths

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• Fix madness with libpaths

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• bump dev version

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• Add debugging informtaion to test ouput

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• prefix libpath, not replace

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• Update Docs

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• refactor local installs

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• refactor package info expectations

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• Allow matching for repo

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• Change from git2r to gert

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• Chagne dependency in DESCRIPTION

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• Change argument name

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• explicitly define pak sources

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• better define matching regex

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• add libPaths to session info

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• Convert filepath sep in expectations

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• Add updated libpaths to tests

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• Add fix for remotepkgref on Windows

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• nolint

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• Add test for missing package

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• Switch pattern and replacement in file path fix

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Commits on Mar 21, 2024

• add lintr exclusion

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• Add check for singularity

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• Add test for singularity

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• Add check for package existence

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• clean up unneeded nolints

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• add check for multiple installations of package

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• add test for libpaths down the search tree

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• Fix behavior for down-search-path libraries

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• namespace utils::installed.packages()

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• fix IMCOMPLETE_STRING lintr error

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• Linting

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• Fix failing test

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• Check version as part of multiple installs

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• Attempt fixing windows paths

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• reduce strictness for platform check

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• reflow tests when altering libpaths against current

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• Reindent

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• Fix paths on windows (again)

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• Change placeholder return value

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• Add placeholder test

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• move functions into own file

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• Document session info

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• update docstrings

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• Update rendered docs

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• Rename test file

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• Name testthat args

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• Allow NA fgor pkg ref (base pkgs)

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• Reflow docstrings

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• improve tests

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• Add test for empty arguments

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• Add tests for get_package_info()

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• Update docstrings

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• update rendered docs

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• Reflow docstrings

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• Update rendered docs

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Commits on Mar 22, 2024

• Add tests for NULL arguments

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• change structure of outputs

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Commits on Mar 25, 2024

• Update signature for get_package_info

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• update rendered docs

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• re-enable tests

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• Add test for mixed nesting

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• lintr exclusion

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• Add handling for packages loaded with pkgload

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• Add test for devtools::load_all()

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• Add pkgload dependency

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• Add skips for missing packages

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• Add warning handling

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• Reindent

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• Add devtools to suggests

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• Check for pkgload, not CRAN for warning handler

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• Do not test for silence

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• update rendered docs

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• Normalize path

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Commits on Mar 26, 2024

• change output key name

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