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Quarto GHA Workflow Runner committed Feb 5, 2024
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2 changes: 1 addition & 1 deletion .nojekyll
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93deffdf
c8bb9b59
4 changes: 2 additions & 2 deletions _tex/index.tex
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Expand Up @@ -230,7 +230,7 @@ \subsection{Metacommunity model}\label{metacommunity-model}
the uniform distribution are scaled by dividing by \(0.33S\) to yield
the final interaction strength for each interacting pair.

\begin{longtable}[]{@{}ll@{}}
\begin{longtable}[]{@{}lc@{}}
\caption{Intervals used for the uniform distribution from which
interaction strengths values are drawn from for the different types of
species pair interactions. Note this is represent the effect of species
Expand Down Expand Up @@ -289,7 +289,7 @@ \subsection{Metacommunity model}\label{metacommunity-model}
for each species. The parameters used for \(L\) are trophic level
dependant and are show in Table~\ref{tbl-interaction_decay}

\begin{longtable}[]{@{}lll@{}}
\begin{longtable}[]{@{}lcc@{}}
\caption{Parameters for the normal distributions used to determine the
dispersal decay (\(L\)) for each species depending on its trophic
level.}\label{tbl-interaction_decay}\tabularnewline
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36 changes: 18 additions & 18 deletions index.html
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Expand Up @@ -232,45 +232,45 @@ <h3 data-number="2.1" class="anchored" data-anchor-id="metacommunity-model"><spa
<thead>
<tr class="header">
<th>Interacting pair</th>
<th>Range of uniform distribution</th>
<th style="text-align: center;">Range of uniform distribution</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Plant-plant</td>
<td>-1 – 0</td>
<td style="text-align: center;">-1 – 0</td>
</tr>
<tr class="even">
<td>Plant-herbivore</td>
<td>0 – 0.1</td>
<td style="text-align: center;">0 – 0.1</td>
</tr>
<tr class="odd">
<td>Plant-carnivore</td>
<td>0</td>
<td style="text-align: center;">0</td>
</tr>
<tr class="even">
<td>Herbivore-plant</td>
<td>-0.3 – 0</td>
<td style="text-align: center;">-0.3 – 0</td>
</tr>
<tr class="odd">
<td>Herbivore-herbivore</td>
<td>-0.2– -0.15</td>
<td style="text-align: center;">-0.2– -0.15</td>
</tr>
<tr class="even">
<td>Herbivore-carnivore</td>
<td>0 – 0.08</td>
<td style="text-align: center;">0 – 0.08</td>
</tr>
<tr class="odd">
<td>Carnivore-plant</td>
<td>0</td>
<td style="text-align: center;">0</td>
</tr>
<tr class="even">
<td>Carnivore-herbivore</td>
<td>-0.1 – 0</td>
<td style="text-align: center;">-0.1 – 0</td>
</tr>
<tr class="odd">
<td>Carnivore-carnivore</td>
<td>-0.1 – 0</td>
<td style="text-align: center;">-0.1 – 0</td>
</tr>
</tbody>
</table>
Expand All @@ -297,25 +297,25 @@ <h3 data-number="2.1" class="anchored" data-anchor-id="metacommunity-model"><spa
<thead>
<tr class="header">
<th>Trophic level</th>
<th><span class="math inline">\(\mu\)</span></th>
<th><span class="math inline">\(\sigma\)</span></th>
<th style="text-align: center;"><span class="math inline">\(\mu\)</span></th>
<th style="text-align: center;"><span class="math inline">\(\sigma\)</span></th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Plant</td>
<td>0.3</td>
<td>0.075</td>
<td style="text-align: center;">0.3</td>
<td style="text-align: center;">0.075</td>
</tr>
<tr class="even">
<td>Herbivore</td>
<td>0.2</td>
<td>0.05</td>
<td style="text-align: center;">0.2</td>
<td style="text-align: center;">0.05</td>
</tr>
<tr class="odd">
<td>Carnivore</td>
<td>0.1</td>
<td>0.025</td>
<td style="text-align: center;">0.1</td>
<td style="text-align: center;">0.025</td>
</tr>
</tbody>
</table>
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36 changes: 18 additions & 18 deletions index.xml
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Expand Up @@ -210,45 +210,45 @@ Nacional (IGN). …</p>
<thead>
<tr>
<th>Interacting pair</th>
<th>Range of uniform distribution</th>
<th align="center">Range of uniform distribution</th>
</tr>
</thead>
<tbody>
<tr>
<td>Plant-plant</td>
<td>-1 – 0</td>
<td align="center">-1 – 0</td>
</tr>
<tr>
<td>Plant-herbivore</td>
<td>0 – 0.1</td>
<td align="center">0 – 0.1</td>
</tr>
<tr>
<td>Plant-carnivore</td>
<td>0</td>
<td align="center">0</td>
</tr>
<tr>
<td>Herbivore-plant</td>
<td>-0.3 – 0</td>
<td align="center">-0.3 – 0</td>
</tr>
<tr>
<td>Herbivore-herbivore</td>
<td>-0.2– -0.15</td>
<td align="center">-0.2– -0.15</td>
</tr>
<tr>
<td>Herbivore-carnivore</td>
<td>0 – 0.08</td>
<td align="center">0 – 0.08</td>
</tr>
<tr>
<td>Carnivore-plant</td>
<td>0</td>
<td align="center">0</td>
</tr>
<tr>
<td>Carnivore-herbivore</td>
<td>-0.1 – 0</td>
<td align="center">-0.1 – 0</td>
</tr>
<tr>
<td>Carnivore-carnivore</td>
<td>-0.1 – 0</td>
<td align="center">-0.1 – 0</td>
</tr>
</tbody>
</table>
Expand Down Expand Up @@ -363,29 +363,29 @@ Nacional (IGN). …</p>
<thead>
<tr>
<th>Trophic level</th>
<th><inline-formula><alternatives>
<th align="center"><inline-formula><alternatives>
<tex-math><![CDATA[\mu]]></tex-math>
<mml:math display="inline" xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mi>μ</mml:mi></mml:math></alternatives></inline-formula></th>
<th><inline-formula><alternatives>
<th align="center"><inline-formula><alternatives>
<tex-math><![CDATA[\sigma]]></tex-math>
<mml:math display="inline" xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mi>σ</mml:mi></mml:math></alternatives></inline-formula></th>
</tr>
</thead>
<tbody>
<tr>
<td>Plant</td>
<td>0.3</td>
<td>0.075</td>
<td align="center">0.3</td>
<td align="center">0.075</td>
</tr>
<tr>
<td>Herbivore</td>
<td>0.2</td>
<td>0.05</td>
<td align="center">0.2</td>
<td align="center">0.05</td>
</tr>
<tr>
<td>Carnivore</td>
<td>0.1</td>
<td>0.025</td>
<td align="center">0.1</td>
<td align="center">0.025</td>
</tr>
</tbody>
</table>
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2 changes: 1 addition & 1 deletion notebooks/data-screening-preview.html
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Expand Up @@ -896,7 +896,7 @@ <h3 class="anchored" data-anchor-id="timeline-plot">Timeline Plot</h3>
}
}
});
</script> </div> <!-- /content --> <script>var lightboxQuarto = GLightbox({"closeEffect":"zoom","openEffect":"zoom","selector":".lightbox","loop":false,"descPosition":"bottom"});
</script> </div> <!-- /content --> <script>var lightboxQuarto = GLightbox({"selector":".lightbox","closeEffect":"zoom","loop":false,"descPosition":"bottom","openEffect":"zoom"});
window.onload = () => {
lightboxQuarto.on('slide_before_load', (data) => {
const { slideIndex, slideNode, slideConfig, player, trigger } = data;
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2 changes: 1 addition & 1 deletion notebooks/data-screening.embed.ipynb
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Expand Up @@ -9,7 +9,7 @@
"Steve Purves [![](data:image/png;base64,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)](https://orcid.org/0000-0002-0760-5497) \n",
"Charlotte Wickham"
],
"id": "6329fbc7-49a5-4748-91c9-24f90a360422"
"id": "b99e1872-ac81-487e-afe9-dc717e18a4d7"
},
{
"cell_type": "code",
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2 changes: 1 addition & 1 deletion notebooks/data-screening.out.ipynb
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Expand Up @@ -9,7 +9,7 @@
"Steve Purves [![](data:image/png;base64,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)](https://orcid.org/0000-0002-0760-5497) \n",
"Charlotte Wickham"
],
"id": "f0e1816e-bf2f-4fa8-9088-64878f2788b1"
"id": "c6e2142b-e843-46e2-baa1-75a3c5e912a2"
},
{
"cell_type": "code",
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