feat: fix sampling code and add distance-based background #597
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| name: Monorepo tests | |
| on: | |
| schedule: | |
| - cron: '0 0 * * 1,3,5' | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| GBIF: | |
| name: "GBIF" | |
| runs-on: "ubuntu-latest" | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@v1 | |
| - name: "Bootstrap the package" | |
| run: julia --project=./GBIF GBIF/bootstrap.jl | |
| - uses: julia-actions/julia-buildpkg@latest | |
| with: | |
| project: GBIF | |
| - uses: julia-actions/julia-runtest@latest | |
| with: | |
| project: GBIF | |
| annotate: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: GBIF/src | |
| - run: mv lcov.info GBIF-lcov.info | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: GBIF-lcov.info | |
| Phylopic: | |
| name: "Phylopic" | |
| runs-on: "ubuntu-latest" | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@v1 | |
| - name: "Bootstrap the package" | |
| run: julia --project=./Phylopic Phylopic/bootstrap.jl | |
| - uses: julia-actions/julia-buildpkg@latest | |
| with: | |
| project: Phylopic | |
| - uses: julia-actions/julia-runtest@latest | |
| with: | |
| project: Phylopic | |
| annotate: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: Phylopic/src | |
| - run: mv lcov.info Phylopic-lcov.info | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: Phylopic-lcov.info | |
| SimpleSDMLayers: | |
| name: "SimpleSDMLayers" | |
| runs-on: "ubuntu-latest" | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@v1 | |
| - name: "Bootstrap the package" | |
| run: julia --project=./SimpleSDMLayers SimpleSDMLayers/bootstrap.jl | |
| - uses: julia-actions/julia-buildpkg@latest | |
| with: | |
| project: SimpleSDMLayers | |
| - uses: julia-actions/julia-runtest@latest | |
| with: | |
| project: SimpleSDMLayers | |
| annotate: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: SimpleSDMLayers/src | |
| - run: mv lcov.info SimpleSDMLayers-lcov.info | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: SimpleSDMLayers-lcov.info | |
| SimpleSDMDatasets: | |
| name: "SimpleSDMDatasets" | |
| runs-on: "ubuntu-latest" | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@v1 | |
| - name: "Bootstrap the package" | |
| run: julia --project=./SimpleSDMDatasets SimpleSDMDatasets/bootstrap.jl | |
| - uses: julia-actions/julia-buildpkg@latest | |
| with: | |
| project: SimpleSDMDatasets | |
| - uses: julia-actions/julia-runtest@latest | |
| with: | |
| project: SimpleSDMDatasets | |
| annotate: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: SimpleSDMDatasets/src | |
| - run: mv lcov.info SimpleSDMDatasets-lcov.info | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: SimpleSDMDatasets-lcov.info | |
| Fauxcurrences: | |
| name: "Fauxcurrences" | |
| runs-on: "ubuntu-latest" | |
| needs: [GBIF, SimpleSDMLayers] | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@v1 | |
| - name: "Bootstrap the package" | |
| run: julia --project=./Fauxcurrences Fauxcurrences/bootstrap.jl | |
| - uses: julia-actions/julia-buildpkg@latest | |
| with: | |
| project: Fauxcurrences | |
| - uses: julia-actions/julia-runtest@latest | |
| with: | |
| project: Fauxcurrences | |
| annotate: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: Fauxcurrences/src | |
| - run: mv lcov.info Fauxcurrences-lcov.info | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: Fauxcurrences-lcov.info | |
| SpeciesDistributionToolkit: | |
| needs: [GBIF, Fauxcurrences, SimpleSDMLayers, SimpleSDMDatasets, Phylopic] | |
| name: "SpeciesDistributionToolkit" | |
| runs-on: "ubuntu-latest" | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@v1 | |
| - name: "Bootstrap the package" | |
| run: julia --project=. bootstrap.jl | |
| - uses: julia-actions/julia-buildpkg@latest | |
| - uses: julia-actions/julia-runtest@latest | |
| with: | |
| annotate: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: src | |
| - run: mv lcov.info SpeciesDistributionToolkit-lcov.info | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: SpeciesDistributionToolkit-lcov.info | |
| Codecoverage: | |
| name: "Upload coverage" | |
| needs: [SpeciesDistributionToolkit] | |
| if: ${{ always() }} | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: coverage | |
| path: ./codecov | |
| - name: Check the coverage content | |
| run: ls -lah ./codecov | |
| - name: Concatenate | |
| run: cat ./codecov/*.info >> ./lcov.info | |
| - uses: codecov/codecov-action@v2 | |
| with: | |
| file: ./lcov.info | |
| flags: unittests | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |