Merge pull request #9 from oliviaAB/main

Added hidecan logo

README.Rmd

@@ -13,7 +13,7 @@ knitr::opts_chunk$set(
 )
 ```
 
-# hidecan
+# hidecan <img src="man/figures/logo.png" align="right" alt="" width="120" />
 
 <!-- badges: start -->
 <!-- badges: end -->

README.md

@@ -1,7 +1,7 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# hidecan
+# hidecan <img src="man/figures/logo.png" align="right" alt="" width="120" />
 
 <!-- badges: start -->
 <!-- badges: end -->

data-raw/make_logo.R

@@ -0,0 +1,70 @@
+library(hexSticker)
+library(hidecan)
+library(tibble)
+library(ggplot2)
+
+z <- list()
+
+z[["GWAS"]] <- tibble(
+  chromosome = "chromosome 1",
+  position = c(0, 15, 80, 100),
+  score = c(0.1, 5, 6.5, 0.1)
+)
+
+z[["DE"]] <- tibble(
+  chromosome = "chromosome 1",
+  start = c(0, 15.5, 40, 50, 52, 79, 100),
+  end = start,
+  score = c(0.1, 5, 4.5, 8, 6.5, 3.5, 0.1),
+  log2FoldChange = 3
+)
+
+z[["CAN"]] <- tibble(
+  chromosome = "chromosome 1",
+  start = c(50.5, 79.5),
+  end = start,
+  name = c("", "")
+)
+
+hidecan_plot <- hidecan_plot(
+  gwas_list = z$GWAS,
+  de_list = z$DE,
+  can_list = z$CAN,
+  title = "HIDECAN plot",
+  point_size = 1.5,
+  label_size = 3.5
+) +
+  labs(
+    title = NULL,
+    x = NULL
+  ) +
+  theme(
+    axis.text.x = element_blank(),
+    axis.ticks.x = element_blank(),
+    axis.text.y = element_blank(),
+    axis.ticks.y = element_blank(),
+    legend.position = "none",
+    strip.background.x = element_rect(fill = "#6cc3c6"),
+    strip.text.x = element_text(
+      margin = margin(0, 0, 0, 0),
+      color = NA
+    ),
+    panel.grid = element_blank()
+  ) +
+  theme_transparent()
+
+col_border <- "#399093"
+col_background <- "#ceebec"
+sticker(
+  hidecan_plot,
+  package = "hidecan",
+  p_size = 20,
+  p_color = col_border,
+  s_x = 1,
+  s_y = 0.8,
+  s_width = 1.3,
+  s_height = 0.7,
+  h_color = col_border,
+  h_fill = col_background,
+  filename = "man/figures/logo.png"
+)

renv.lock

@@ -23,11 +23,11 @@
       "Source": "GitHub",
       "RemoteType": "github",
       "RemoteHost": "api.github.com",
-      "RemoteUsername": "jendelman",
       "RemoteRepo": "GWASpoly",
-      "RemoteRef": "master",
+      "RemoteUsername": "jendelman",
+      "RemoteRef": "HEAD",
       "RemoteSha": "d296a13c6445169c0c7641757833c856f48c04bb",
-      "Hash": "3254a7d35839eb5d65843c0f37a776d8",
+      "Hash": "f1d969f781c99b76dc4d9ccfc81d8fcb",
       "Requirements": [
         "Matrix",
         "ggplot2",
@@ -73,10 +73,10 @@
     },
     "Rcpp": {
       "Package": "Rcpp",
-      "Version": "1.0.9",
+      "Version": "1.0.10",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "e9c08b94391e9f3f97355841229124f2",
+      "Hash": "e749cae40fa9ef469b6050959517453c",
       "Requirements": []
     },
     "askpass": {
@@ -299,10 +299,10 @@
     },
     "data.table": {
       "Package": "data.table",
-      "Version": "1.14.2",
+      "Version": "1.14.6",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "36b67b5adf57b292923f5659f5f0c853",
+      "Hash": "aecef50008ea7b57c76f1cb5c127fb02",
       "Requirements": []
     },
     "dbplyr": {
@@ -483,10 +483,10 @@
     },
     "fastmap": {
       "Package": "fastmap",
-      "Version": "1.1.0",
+      "Version": "1.1.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "77bd60a6157420d4ffa93b27cf6a58b8",
+      "Hash": "f7736a18de97dea803bde0a2daaafb27",
       "Requirements": []
     },
     "fontawesome": {
@@ -568,10 +568,10 @@
     },
     "ggnewscale": {
       "Package": "ggnewscale",
-      "Version": "0.4.7",
+      "Version": "0.4.8",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "df57a381783476d083e9f7350d382c3d",
+      "Hash": "871327b44b04bfb19dc28f60b96806c1",
       "Requirements": [
         "ggplot2"
       ]
@@ -839,10 +839,10 @@
     },
     "jsonlite": {
       "Package": "jsonlite",
-      "Version": "1.8.4",
+      "Version": "1.8.5",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "a4269a09a9b865579b2635c77e572374",
+      "Hash": "3ee4d9899e4db3e976fc82b98d24a31a",
       "Requirements": []
     },
     "knitr": {
@@ -869,10 +869,10 @@
     },
     "later": {
       "Package": "later",
-      "Version": "1.3.0",
+      "Version": "1.3.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "7e7b457d7766bc47f2a5f21cc2984f8e",
+      "Hash": "40401c9cf2bc2259dfe83311c9384710",
       "Requirements": [
         "Rcpp",
         "rlang"
@@ -1111,10 +1111,10 @@
     },
     "processx": {
       "Package": "processx",
-      "Version": "3.8.0",
+      "Version": "3.8.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "a33ee2d9bf07564efb888ad98410da84",
+      "Hash": "d75b4059d781336efba24021915902b4",
       "Requirements": [
         "R6",
         "ps"
@@ -1160,10 +1160,10 @@
     },
     "ps": {
       "Package": "ps",
-      "Version": "1.7.2",
+      "Version": "1.7.5",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "68dd03d98a5efd1eb3012436de45ba83",
+      "Hash": "709d852d33178db54b17c722e5b1e594",
       "Requirements": []
     },
     "purrr": {
@@ -1179,10 +1179,10 @@
     },
     "ragg": {
       "Package": "ragg",
-      "Version": "1.2.3",
+      "Version": "1.2.4",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "a7b1a8b453c5385786cdfa75aba57483",
+      "Hash": "0db17bd5a1d4abfec76487b6f5dd957b",
       "Requirements": [
         "systemfonts",
         "textshaping"
@@ -1306,10 +1306,10 @@
     },
     "rlang": {
       "Package": "rlang",
-      "Version": "1.0.6",
+      "Version": "1.1.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "4ed1f8336c8d52c3e750adcdc57228a7",
+      "Hash": "a85c767b55f0bf9b7ad16c6d7baee5bb",
       "Requirements": []
     },
     "rmarkdown": {
@@ -1867,10 +1867,10 @@
     },
     "xfun": {
       "Package": "xfun",
-      "Version": "0.35",
+      "Version": "0.39",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "f576593107bdf9aa7db48ef75a8c05fb",
+      "Hash": "8f56e9acb54fb525e66464d57ab58bcb",
       "Requirements": []
     },
     "xml2": {