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Working on Inspecting MultiDataSet chapter
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oliviaAB committed Jan 16, 2024
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4 changes: 2 additions & 2 deletions data_import.qmd
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Expand Up @@ -212,7 +212,7 @@ The targets created are:
tar_read(fmetadata_metabo) |> head()
```

Again, the targets factory function does not allow to pass arguments to `readr::read_csv()` (if you need them, please use `import_fmetadata_csv()` directly as we have done in @sec-import-fmeta-manual).
Again, the targets factory function does not allow to pass arguments to `read_csv()` (if you need them, please use `import_fmetadata_csv()` directly as we have done in @sec-import-fmeta-manual).

### Importing features metadata from a GTF/GFF file

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Note that in the samples metadata data-frame, the sample IDs are present both as row names and in the `id` column. This makes it easier to subset the datasets later on.

As for the other import functions, `import_smetadata_csv()` accepts arguments that will be passed to `readr::read_csv()` in order to specify how the file should be read. The targets factory version does not have this option.
As for the other import functions, `import_smetadata_csv()` accepts arguments that will be passed to `read_csv()` in order to specify how the file should be read. The targets factory version does not have this option.

## Creating the omics sets

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573 changes: 533 additions & 40 deletions docs/inspecting_multidataset.html

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42 changes: 42 additions & 0 deletions docs/search.json

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