Version bumped to 0.3.0

Plant-Food-Research-Open · Apr 30, 2024 · 4355771 · 4355771
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## 0.2.0 - [24-April-2024]
+## 0.3.0 - [29-April-2024]
 
 ### `Added`
 

diff --git a/nextflow.config b/nextflow.config
@@ -58,7 +58,7 @@ manifest {
     description                 = """A NextFlow pipeline for pan-genome annotation"""
     mainScript                  = 'main.nf'
     nextflowVersion             = '!>=23.04.4'
-    version                     = '0.2.0'
+    version                     = '0.3.0'
     doi                         = ''
 }
 

diff --git a/tests/stub/assemblysheet.csv b/tests/stub/assemblysheet.csv
@@ -1,3 +1,3 @@
-tag,fasta,is_masked,te_lib
-red5_v2p1,tests/stub/target/red5_v2p1_chr1.fasta.gz,no,
-donghong,tests/stub/target/donghong.chr1.fsa.gz,no,tests/stub/te_lib/donghong.TElib.fa.gz
+tag,fasta,is_masked,te_lib,braker_gff3,braker_hints
+red5_v2p1,tests/stub/target/red5_v2p1_chr1.fasta.gz,no,,tests/stub/braker/red5_v2p1.gff3.gz,tests/stub/braker/red5_v2p1.hints.gff.gz
+donghong,tests/stub/target/donghong.chr1.fsa.gz,no,tests/stub/te_lib/donghong.TElib.fa.gz,tests/stub/braker/red5_v2p1.gff3.gz,tests/stub/braker/red5_v2p1.hints.gff.gz
diff --git a/tests/stub/braker/donghong.gff3.gz b/tests/stub/braker/donghong.gff3.gz
diff --git a/tests/stub/braker/donghong.hints.gff.gz b/tests/stub/braker/donghong.hints.gff.gz
diff --git a/tests/stub/braker/red5_v2p1.gff3.gz b/tests/stub/braker/red5_v2p1.gff3.gz
diff --git a/tests/stub/braker/red5_v2p1.hints.gff.gz b/tests/stub/braker/red5_v2p1.hints.gff.gz