undefined binding 'Metida.islinear' in `@docs` block in src/api.md:262-264 ```@docs Metida.islinear ```

failed to run `@example` block in src/examples.md:30-34 ```@example lmmexample fm = @formula(response ~ 1 + factor*time + (1 + time|subject&factor)) mm = fit(MixedModel, fm, rds, REML=true) println(mm) #hide ``` exception = type FunctionTerm has no field args_parsed Stacktrace: [1] getproperty @ ./Base.jl:37 [inlined] [2] apply_schema(t::StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}, schema::MixedModels.MultiSchema{StatsModels.FullRank}, Mod::Type{MixedModels.LinearMixedModel}) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/randomeffectsterm.jl:57 [3] _broadcast_getindex_evalf @ ./broadcast.jl:683 [inlined] [4] _broadcast_getindex @ ./broadcast.jl:656 [inlined] [5] (::Base.Broadcast.var"#31#32"{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}}})(k::Int64) @ Base.Broadcast ./broadcast.jl:1088 [6] macro expansion @ ./ntuple.jl:72 [inlined] [7] ntuple @ ./ntuple.jl:69 [inlined] [8] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}}) @ Base.Broadcast ./broadcast.jl:1088 [9] materialize @ ./broadcast.jl:873 [inlined] [10] apply_schema(t::Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}, sch::MixedModels.MultiSchema{StatsModels.FullRank}, Ctx::Type) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:30 [11] apply_schema(t::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}}, schema::StatsModels.Schema, Mod::Type{MixedModels.LinearMixedModel}) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:53 [12] MixedModels.LinearMixedModel(f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}}, tbl::NamedTuple{(:subject, :factor, :time, :response), Tuple{PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, Vector{Float64}, Vector{Float64}}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any}) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:67 [13] LinearMixedModel @ ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:50 [inlined] [14] fit(::Type{MixedModels.LinearMixedModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}}, tbl::NamedTuple{(:subject, :factor, :time, :response), Tuple{PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, Vector{Float64}, Vector{Float64}}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, verbose::B

failed to run `@example` block in src/examples.md:53-58 ```@example lmmexample fm2 = @formula(diameter ~ 1 + (1|plate) + (1|sample)) mm = fit(MixedModel, fm2, df, REML=true) println(mm) #hide ``` exception = type FunctionTerm has no field args_parsed Stacktrace: [1] getproperty @ ./Base.jl:37 [inlined] [2] apply_schema(t::StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, schema::MixedModels.MultiSchema{StatsModels.FullRank}, Mod::Type{MixedModels.LinearMixedModel}) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/randomeffectsterm.jl:57 [3] _broadcast_getindex_evalf @ ./broadcast.jl:683 [inlined] [4] _broadcast_getindex @ ./broadcast.jl:656 [inlined] [5] (::Base.Broadcast.var"#31#32"{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}}})(k::Int64) @ Base.Broadcast ./broadcast.jl:1088 [6] ntuple @ ./ntuple.jl:50 [inlined] [7] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}}) @ Base.Broadcast ./broadcast.jl:1088 [8] materialize @ ./broadcast.jl:873 [inlined] [9] apply_schema(t::Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}, sch::MixedModels.MultiSchema{StatsModels.FullRank}, Ctx::Type) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:30 [10] apply_schema(t::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}}, schema::StatsModels.Schema, Mod::Type{MixedModels.LinearMixedModel}) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:53 [11] MixedModels.LinearMixedModel(f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}}, tbl::NamedTuple{(:Column1, :diameter, :plate, :sample), Tuple{Vector{String}, Vector{Float64}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any}) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:67 [12] LinearMixedModel @ ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:50 [inlined] [13] fit(::Type{MixedModels.LinearMixedModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}}, tbl::NamedTuple{(:Column1, :diameter, :plate, :sample), Tuple{Vector{String}, Vector{Float64}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, verbose::Bool, REML::Bool) @ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:194 [14] fit(::Type{MixedModels.LinearMixedModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.Abst

failed to run `@setup` block in src/instanduse.md ```@setup lmmexample ENV["GKSwstype"] = "nul" using Plots, StatsPlots, CSV, DataFrames, Metida gr() Plots.reset_defaults() rds = CSV.File(joinpath(dirname(pathof(Metida)), "..", "test", "csv", "1fptime.csv"); types = [String, String, Float64, Float64]) |> DataFrame p = @df rds plot(:time, :response, group = (:subject, :factor), colour = [:red :blue], legend = false) png(p, "plot1.png") rds = CSV.File(joinpath(dirname(pathof(Metida)), "..", "test", "csv", "1freparma.csv"); types = [String, String, Float64, Float64]) |> DataFrame p = @df rds plot(:time, :response, group = (:subject, :factor), colour = [:red :blue], legend = false) png(p, "plot2.png") ``` exception = LoadError: ArgumentError: Package Plots not found in current path. - Run `import Pkg; Pkg.add("Plots")` to install the Plots package. Stacktrace: [1] macro expansion @ ./loading.jl:1630 [inlined] [2] macro expansion @ ./lock.jl:267 [inlined] [3] require(into::Module, mod::Symbol) @ Base ./loading.jl:1611 [4] eval @ ./boot.jl:370 [inlined] [5] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:1903 [6] include_string (repeats 2 times) @ ./loading.jl:1913 [inlined] [7] #61 @ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:891 [inlined] [8] cd(f::Documenter.var"#61#62"{Module, MarkdownAST.CodeBlock}, dir::String) @ Base.Filesystem ./file.jl:112 [9] runner(#unused#::Type{Documenter.Expanders.SetupBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:890 in expression starting at string:2

failed to run `@example` block in src/instanduse.md:39-44 ```@example lmmexample using Metida, CSV, DataFrames, CategoricalArrays df = CSV.File(joinpath(dirname(pathof(Metida)), "..", "test", "csv", "df0.csv")) |> DataFrame; nothing # hide ``` exception = ArgumentError: Package Metida not found in current path, maybe you meant `import/using ..Metida`. - Otherwise, run `import Pkg; Pkg.add("Metida")` to install the Metida package. Stacktrace: [1] macro expansion @ ./loading.jl:1630 [inlined] [2] macro expansion @ ./lock.jl:267 [inlined] [3] require(into::Module, mod::Symbol) @ Base ./loading.jl:1611 [4] eval @ ./boot.jl:370 [inlined] [5] #54 @ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined] [6] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [7] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737 [8] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [9] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [10] with_logger @ ./logging.jl:626 [inlined] [11] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [12] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736

failed to run `@example` block in src/instanduse.md:51-57 ```@example lmmexample transform!(df, :subject => categorical, renamecols=false) transform!(df, :period => categorical, renamecols=false) transform!(df, :sequence => categorical, renamecols=false) transform!(df, :formulation => categorical, renamecols=false) nothing # hide ``` exception = UndefVarError: `categorical` not defined Stacktrace: [1] top-level scope @ instanduse.md:52 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736

failed to run `@example` block in src/instanduse.md:70-74 ```@example lmmexample lmm = LMM(@formula(var~sequence+period+formulation), df; random = VarEffect(@covstr(formulation|subject), CSH), repeated = VarEffect(@covstr(formulation|subject), DIAG)); ``` exception = LoadError: UndefVarError: `@covstr` not defined Stacktrace: [1] top-level scope @ :0 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736 in expression starting at instanduse.md:72

failed to run `@example` block in src/instanduse.md:80-82 ```@example lmmexample fit!(lmm) ``` exception = UndefVarError: `fit!` not defined Stacktrace: [1] top-level scope @ instanduse.md:81 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736

failed to run `@example` block in src/instanduse.md:86-88 ```@example lmmexample lmm.log ``` exception = UndefVarError: `lmm` not defined Stacktrace: [1] top-level scope @ :0 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736