Initial changes to implement array submission #16
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| --- | |
| name: Slurm | |
| on: [push] | |
| jobs: | |
| e2e-slurm: | |
| name: Test e2e with SLURM | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout our repo | |
| uses: actions/checkout@v4 | |
| - name: Install apptainer | |
| uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: 1.1.2 | |
| - name: Install Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: babs | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| - name: Conda info | |
| shell: bash -el {0} | |
| run: conda info | |
| - name: Install Babs | |
| shell: bash -el {0} | |
| run: ./tests/e2e-slurm/install-babs.sh | |
| - name: Execute e2e with SLURM | |
| shell: bash -el {0} | |
| run: ./tests/e2e-slurm/main.sh |