0.7.5rc2

What's Changed

🛠 Breaking Changes

• Fix volume selection and temporarily remove --dummy-scans parameter by @tsalo in #468

🐛 Bug Fixes

• Return the mean M0 TR in ExtractCBF by @tsalo in #470

Other Changes

• Upgrade to deno-based BIDS validator by @tsalo in #467

Full Changelog: 0.7.5rc1...0.7.5rc2

0.7.5rc1

What's Changed

🐛 Bug Fixes

• Fix CBF CIFTI generation when --project-goodvoxels is enabled by @tsalo in #460

Full Changelog: 0.7.4...0.7.5rc1

0.7.4

What's Changed

🛠 Breaking Changes

• Bring up to date with fMRIPrep 24.1.1 by @tsalo in #455

Full Changelog: 0.7.3...0.7.4

0.7.3

This release fixes a bug in multi-PLD PCASL CBF calculation. Thanks to @xu-boyan for identifying the problem!

What's Changed

🐛 Bug Fixes

• Add t1tissue term to multi-delay CBF formula by @tsalo in #432

Full Changelog: 0.7.2...0.7.3

0.7.2

A patch release to fix GIFTI outputs.

What's Changed

🐛 Bug Fixes

• Split giftis by hemisphere by @tsalo in #419

Full Changelog: 0.7.1...0.7.2

0.7.1

A hotfix release following 0.7.0.

What's Changed

🐛 Bug Fixes

• Fix the entrypoint path in the Dockerfile by @tsalo in #413

Full Changelog: 0.7.0...0.7.1

0.7.0

What's Changed

🛠 Breaking Changes

• Rename QC metrics and output QC files as TSVs by @tsalo in #375
• Move atlases into a subfolder by @tsalo in #377

🎉 Exciting New Features

• Add --ignore fmap-jacobian option by @tsalo in #385
• Support lists in filter file with * or null by @tsalo in #388

🐛 Bug Fixes

• Flip order of transforms in init_ds_volumes_wf by @tsalo in #392

Other Changes

• Use space definitions from niworkflows by @tsalo in #378
• Use niworkflows enhance-and-skullstrip workflow by @tsalo in #371
• Update Nilearn requirement to 0.10.3 by @tsalo in #396
• [ENH] Update docker image by @mattcieslak in #409
• [FIX] update to newer docker by @mattcieslak in #412
• Update codecov orb version by @tsalo in #410

Full Changelog: 0.6.0...0.7.0

0.6.0

This release makes substantial changes to ASLPrep.
The two main changes are (1) the Schaefer atlases are replaced with the PennLINC team's new 4S atlases, which combine the Schaefer cortical atlases and several subcortical atlases, and (2) a major rearchitect of the package based on fMRIPrep version 23.2.0a2. The latter allows ASLPrep to write out CIFTI and GIFTI format derivatives, and fixes SDC support (although SDC support is dependent on the next SDCFlows release, so in practice it won't work just yet).

I'd like to credit Chris Markiewicz (@effigies) for doing the majority of the work in the fMRIPrep refactor.

What's Changed

🛠 Breaking Changes

• Add AtlasPack atlases by @tsalo in #330
• Replace AtlasPack 0.0.5 atlases with AtlasPack 0.1.0 atlases by @tsalo in #334
• Remove sdcflows and model ASLPrep on fMRIPrep/next by @tsalo in #338

🎉 Exciting New Features

• Write out GIFTI and CIFTI CBF maps by @tsalo in #361

🐛 Bug Fixes

• Pin scipy version to 1.10.1 by @tsalo in #333
• Raise error if no M0 volume(s)/estimate available and background suppression is enabled by @tsalo in #337
• Limit BASIL --slicedt argument to ascending slice orders by @tsalo in #348
• Fix several warnings by @tsalo in #364

Other Changes

• Add 0.5.x release notes to changelog by @tsalo in #339
• Add dependabot Action by @tsalo in #365
• Fix fMRIPrep-related bugs by @tsalo in #366
• Prepare for 0.6.0 release by @tsalo in #362

New Contributors

• @dependabot made their first contribution in #367

Full Changelog: 0.5.1...0.6.0

0.6.0rc1

What's Changed

🛠 Breaking Changes

• Add AtlasPack atlases by @tsalo in #330

🐛 Bug Fixes

• Pin scipy version to 1.10.1 by @tsalo in #333

Full Changelog: 0.5.1...0.6.0rc1

0.5.1

What's Changed

🐛 Bug Fixes

• Make M0 TR optional for BASIL by @tsalo in #323
• Fix BolusCutOffTechnique typo by @tsalo in #328

Other Changes

• Remove unnecessary dependencies by @tsalo in #325
• Document M0 use in reports by @tsalo in #329

Full Changelog: 0.5.0...0.5.1