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Add ASL fields to config #282

Merged
merged 19 commits into from
Jan 30, 2024
Merged
41 changes: 40 additions & 1 deletion cubids/data/config.yml
Original file line number Diff line number Diff line change
@@ -1,28 +1,38 @@
# These are non-BIDS fields that can be added by CuBIDS
derived_params:
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anat:
# Number of voxels in first dimension
Dim1Size:
suggest_variant_rename: yes
# Number of voxels in second dimension
Dim2Size:
suggest_variant_rename: yes
# Number of voxels in third dimension
Dim3Size:
suggest_variant_rename: yes
# Number of slice time values
NSliceTimes:
suggest_variant_rename: yes
# Number of volumes
NumVolumes:
suggest_variant_rename: yes
# Boolean indicating oblique acquisition
Obliquity:
suggest_variant_rename: yes
# String describing image orientation (e.g., LAS+)
ImageOrientation:
suggest_variant_rename: yes
# Size of voxels in first dimension, in mm
VoxelSizeDim1:
tolerance: 0.001
precision: 3
suggest_variant_rename: yes
# Size of voxels in second dimension, in mm
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VoxelSizeDim2:
tolerance: 0.001
precision: 3
suggest_variant_rename: yes
# Size of voxels in third dimension, in mm
VoxelSizeDim3:
tolerance: 0.001
precision: 3
Expand Down Expand Up @@ -333,6 +343,18 @@ sidecar_params:
precision: 6
suggest_variant_rename: yes
perf:
ArterialSpinLabelingType:
suggest_variant_rename: yes
BackgroundSuppression:
suggest_variant_rename: yes
BackgroundSuppressionNumberPulses:
suggest_variant_rename: yes
BolusCutOffFlag:
suggest_variant_rename: yes
BolusCutOffTechnique:
suggest_variant_rename: yes
CASLType:
suggest_variant_rename: yes
EchoTime:
tolerance: 0.001
precision: 3
Expand All @@ -343,6 +365,17 @@ sidecar_params:
suggest_variant_rename: yes
FlipAngle:
suggest_variant_rename: yes
LabelingDistance:
tolerance: 0.1
suggest_variant_rename: yes
LabelingEfficiency:
tolerance: 0.001
precision: 3
suggest_variant_rename: yes
LookLocker:
suggest_variant_rename: yes
M0Type:
suggest_variant_rename: yes
MultibandAccelerationFactor:
suggest_variant_rename: yes
NumberOfVolumesDiscardedByScanner:
Expand All @@ -355,6 +388,10 @@ sidecar_params:
suggest_variant_rename: yes
PartialFourier:
suggest_variant_rename: yes
PASLType:
suggest_variant_rename: yes
PCASLType:
suggest_variant_rename: yes
PhaseEncodingDirection:
suggest_variant_rename: yes
RepetitionTime:
Expand All @@ -367,6 +404,8 @@ sidecar_params:
tolerance: 0.001
precision: 3
suggest_variant_rename: yes
VascularCrushing:
suggest_variant_rename: yes
VolumeTiming:
tolerance: 0.000001
precision: 6
Expand Down Expand Up @@ -409,4 +448,4 @@ sidecar_params:
VolumeTiming:
tolerance: 0.000001
precision: 6
suggest_variant_rename: yes
suggest_variant_rename: yes