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| # Python CircleCI 2.1 configuration file | ||
| # | ||
| # Check https://circleci.com/docs/2.1/language-python/ for more details | ||
| # | ||
| version: 2.1 | ||
| orbs: | ||
| codecov: codecov/[email protected] | ||
| jobs: | ||
| set_up_conda: | ||
| machine: | ||
| image: ubuntu-2004:202201-02 | ||
|
|
||
| test_py38: | ||
| working_directory: /home/circleci/src/CuBIDS | ||
| docker: | ||
| - image: continuumio/miniconda3 | ||
| steps: | ||
| - checkout: | ||
| path: /home/circleci/src/CuBIDS | ||
| - checkout | ||
| - run: | ||
| name: install miniconda | ||
| command: | | ||
| export MINICONDA=/tmp/miniconda | ||
| export PATH="$MINICONDA/bin:$PATH" | ||
| wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh | ||
| bash /tmp/miniconda.sh -b -f -p $MINICONDA | ||
| conda config --set always_yes yes | ||
| conda update conda | ||
| conda info -a | ||
| conda create -n cubids python=3.9 pip | ||
| source activate cubids | ||
| conda install -c conda-forge -y datalad | ||
| # Add nodejs and the validator | ||
| conda install nodejs | ||
| npm install -g yarn && \ | ||
| npm install -g bids-validator | ||
| - persist_to_workspace: | ||
| root: /tmp | ||
| paths: | ||
| - miniconda | ||
| name: Generate environment | ||
| command: | | ||
| conda create -n py38_env python=3.8 pip -yq | ||
| source activate py38_env | ||
| pip install -e .[tests] | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| source activate py38_env | ||
| py.test --cov-append --cov-report=xml --cov=cubids cubids | ||
| mkdir /tmp/src/coverage | ||
| mv /home/circleci/src/CuBIDS/.coverage /tmp/src/coverage/.coverage.py38 | ||
| run_pytests: | ||
| machine: | ||
| image: ubuntu-2004:202201-02 | ||
| test_py39: | ||
| working_directory: /home/circleci/src/CuBIDS | ||
| docker: | ||
| - image: continuumio/miniconda3 | ||
| steps: | ||
| - checkout: | ||
| path: /home/circleci/src/CuBIDS | ||
|
|
||
| - attach_workspace: | ||
| at: /tmp | ||
|
|
||
| - checkout | ||
| - run: | ||
| name: Test CuBIDS | ||
| command: | | ||
| export PATH=/tmp/miniconda/bin:$PATH | ||
| source activate cubids | ||
| # Install CuBIDS | ||
| name: Generate environment | ||
| command: | | ||
| conda create -n py39_env python=3.9 pip -yq | ||
| source activate py39_env | ||
| pip install -e .[tests] | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| source activate py39_env | ||
| py.test --cov-append --cov-report=xml --cov=cubids cubids | ||
| mkdir /tmp/src/coverage | ||
| mv /home/circleci/src/CuBIDS/.coverage /tmp/src/coverage/.coverage.py39 | ||
| # Reinstall bids-validator | ||
| sudo apt update | ||
| sudo apt install nodejs npm | ||
| npm install -g yarn && \ | ||
| npm install -g bids-validator | ||
| # Run tests | ||
| pytest cubids | ||
| deployable: | ||
| test_py310: | ||
| working_directory: /home/circleci/src/CuBIDS | ||
| docker: | ||
| - image: busybox:latest | ||
| - image: continuumio/miniconda3 | ||
| steps: | ||
| - run: echo Deploying! | ||
| - checkout | ||
| - run: | ||
| name: Generate environment | ||
| command: | | ||
| conda create -n py310_env python=3.10 pip -yq | ||
| source activate py310_env | ||
| pip install -e .[tests] | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| source activate py310_env | ||
| py.test --cov-append --cov-report=xml --cov=cubids cubids | ||
| mkdir /tmp/src/coverage | ||
| mv /home/circleci/src/CuBIDS/.coverage /tmp/src/coverage/.coverage.py310 | ||
| deploy_pypi: | ||
| machine: | ||
| image: ubuntu-2004:202201-02 | ||
| working_directory: /tmp/src/CuBIDS | ||
| test_py311: | ||
| working_directory: /home/circleci/src/CuBIDS | ||
| docker: | ||
| - image: continuumio/miniconda3 | ||
| steps: | ||
| - checkout: | ||
| path: /home/circleci/src/CuBIDS | ||
| - checkout | ||
| - run: | ||
| name: Generate distribution archives | ||
| command: | | ||
| python3 -m pip install --upgrade build | ||
| python3 -m build | ||
| name: Generate environment | ||
| command: | | ||
| conda create -n py311_env python=3.11 pip -yq | ||
| source activate py311_env | ||
| pip install -e .[tests] | ||
| - run: | ||
| name: Run tests | ||
| command: | | ||
| source activate py311_env | ||
| py.test --cov-append --cov-report=xml --cov=cubids cubids | ||
| mkdir /tmp/src/coverage | ||
| mv /home/circleci/src/CuBIDS/.coverage /tmp/src/coverage/.coverage.py311 | ||
| merge_coverage: | ||
| working_directory: /home/circleci/src/CuBIDS | ||
| docker: | ||
| - image: continuumio/miniconda3 | ||
| steps: | ||
| - attach_workspace: | ||
| at: /tmp | ||
| - checkout | ||
| - run: | ||
| name: Upload packages to PyPI | ||
| name: Merge coverage files | ||
| command: | | ||
| python3 -m pip install --upgrade twine | ||
| python3 -m twine upload dist/* | ||
| apt-get update | ||
| apt-get install -yqq curl | ||
| source activate py37_env | ||
| cd /tmp/src/coverage/ | ||
| coverage combine | ||
| coverage xml | ||
| - store_artifacts: | ||
| path: /tmp/src/coverage | ||
| - codecov/upload: | ||
| file: /tmp/src/coverage/coverage.xml | ||
|
|
||
| workflows: | ||
| version: 2 | ||
| build_test_deploy: | ||
| version: 2.1 | ||
| run_tests: | ||
| jobs: | ||
| - set_up_conda: | ||
| filters: | ||
| tags: | ||
| only: /.*/ | ||
|
|
||
| - run_pytests: | ||
| requires: | ||
| - set_up_conda | ||
| filters: | ||
| tags: | ||
| only: /.*/ | ||
|
|
||
| - deployable: | ||
| requires: | ||
| - run_pytests | ||
| filters: | ||
| branches: | ||
| only: main | ||
| tags: | ||
| only: /.*/ | ||
|
|
||
| - deploy_pypi: | ||
| - test_py38 | ||
| - test_py39 | ||
| - test_py310 | ||
| - test_py311 | ||
| - merge_coverage: | ||
| requires: | ||
| - deployable | ||
| filters: | ||
| branches: | ||
| only: main | ||
| tags: | ||
| only: /.*/ | ||
| - test_py38 | ||
| - test_py39 | ||
| - test_py310 | ||
| - test_py311 |