Update to v0.12.6

PacificBiosciences · Oct 16, 2024 · 5f0b2b6 · 5f0b2b6
1 parent e265533
commit 5f0b2b6
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Showing 5 changed files with 10 additions and 4 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Change Log
 
+## v0.12.6 - 2024-10-15
+
+### Fixed
+
+- Fix discover mode input path canonicalization (reversed flag logic)
+
 ## v0.12.5 - 2024-10-14
 
 ### Added

diff --git a/Cargo.lock b/Cargo.lock
diff --git a/Cargo.toml b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "sawfish"
-version = "0.12.5"
+version = "0.12.6"
 authors = ["Chris Saunders <[email protected]>"]
 description = "Structural variant analysis for mapped PacBio HiFi reads"
 edition = "2021"

diff --git a/LICENSE-THIRDPARTY.json b/LICENSE-THIRDPARTY.json
@@ -1576,7 +1576,7 @@
   },
   {
     "name": "sawfish",
-    "version": "0.12.5",
+    "version": "0.12.6",
     "authors": "Chris Saunders <[email protected]>",
     "repository": null,
     "license": null,

diff --git a/src/cli/discover.rs b/src/cli/discover.rs
@@ -224,7 +224,7 @@ pub fn validate_and_fix_discovery_settings(
     }
 
     let mut settings = settings;
-    if settings.disable_path_canonicalization {
+    if !settings.disable_path_canonicalization {
         settings.ref_filename = canonicalize_string_path(&settings.ref_filename);
         settings.bam_filename = canonicalize_string_path(&settings.bam_filename);