v3.3.0

Upgraded workflows and documentation for snakemake v8

• Workflows tested with v8.25
• snakemake environment file updated (snakemake-environment.yaml)
• Documentation updated for cluster execution modules in snakemake v8

HiFi-MAG-Pipeline

• sembin upgraded to v2.1, changed command-line syntax
• checkm2 upgraded to v1.0.2
• gtdbtk upgraded to v2.4.0, database must now be R220, changed command line syntax and metadata gathering
• das_tool upgraded to v1.1.7
• fixed checkm2 database bug in #87
• fixed issue reported in #86
• upgraded conda envs may solve #88
• added memory resources, defaults selected based on benchmarks of typical and deep-sequencing datasets