Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merging develop into main for release #15

Merged
merged 18 commits into from
Feb 14, 2024
Merged

Merging develop into main for release #15

merged 18 commits into from
Feb 14, 2024

Conversation

gconcepcion
Copy link
Contributor

Minor README updates

williamrowell
williamrowell requested changes Feb 13, 2024
View reviewed changes
Copy link
Collaborator

@williamrowell williamrowell left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Mostly small changes, and one bigger change. The parse-cohort container is gone, and the parse-cohort.py script is now in the pyyaml container. I'll submit a quick PR for this change against the develop branch.

README.md Outdated Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
williamrowell and others added 11 commits February 13, 2024 15:40
@williamrowell
The parse-cohort image is deprecated, and the script from this contai…
b76af78 
…ner has been added to the pyyaml container.

Updated parse_families task to use pyyaml@sha256:af6f0689a7412b1edf76bd4bf6434e7fa6a86192eebf19573e8618880d9c1dbb
@github-actions
update wdl-ci config file after successful tests
5ae02e6
@williamrowell
Merge pull request #16 from PacificBiosciences/feature/replace-parse-…
47b19c3 
…cohort-container-with-pyyaml

feat: Replace parse-cohort image with pyyaml container.
@gconcepcion @williamrowell
Update README.md
a4d57e0 
Co-authored-by: Billy Rowell <[email protected]>
@gconcepcion @williamrowell
Update README.md
b558dc9 
Co-authored-by: Billy Rowell <[email protected]>
@gconcepcion @williamrowell
Update README.md
9ccd7e8 
Co-authored-by: Billy Rowell <[email protected]>
@gconcepcion @williamrowell
Update README.md
6252d83 
Co-authored-by: Billy Rowell <[email protected]>
@gconcepcion @williamrowell
Update README.md
49c2d4c 
Co-authored-by: Billy Rowell <[email protected]>
@gconcepcion
add example inputs
4574ebd
@gconcepcion
update readme
714aef0
@gconcepcion
Merge branch 'develop' of github.com:PacificBiosciences/HiFi-human-as…
0dd7ee2 
…sembly-WDL into develop
williamrowell
williamrowell requested changes Feb 14, 2024
View reviewed changes
backends/example/single.json Outdated Show resolved Hide resolved
backends/example/trio.json Outdated Show resolved Hide resolved
backends/example/trio.json Outdated Show resolved Hide resolved
@gconcepcion gconcepcion merged commit 3a95564 into main Feb 14, 2024
1 check passed
@gconcepcion gconcepcion deleted the develop branch February 14, 2024 21:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@williamrowell williamrowell williamrowell approved these changes

Assignees

@williamrowell williamrowell

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@gconcepcion @williamrowell