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Use FASTA file size to estimate depth for yak count parameters. #10

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merged 7 commits into from
Oct 2, 2023

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  • updated parameter_meta
  • updated inputs.json
  • cleaned up some whitespace
  • added comments
  • using fasta filesize to estimate depth rather than a separate task; based on Greg's experiments, an uncompressed 10x FASTA is ~60GB

- updated parameter_meta
- updated inputs.json
- cleaned up some whitespace
- added comments
- using fasta filesize to estimate depth rather than a separate task; based on Greg's experiments, an uncompressed 10x FASTA is ~60GB
@williamrowell williamrowell changed the title Take a stab at estimating depth based on filesize. Use FASTA file size to estimate depth for yak count parameters. Sep 29, 2023
@gconcepcion gconcepcion merged commit eee833f into gconcepcion/yak-changes Oct 2, 2023
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@williamrowell williamrowell deleted the wrowell/yak-suggestions branch October 2, 2023 20:56
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2 participants