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README.md

@@ -196,8 +196,7 @@ The Docker image used by a particular step of the workflow can be identified by
 | gfatools | <ul><li>[gfatools 0.4](https://github.com/lh3/gfatools/releases/tag/v0.4)</li><li>[htslib 1.14](https://github.com/samtools/htslib/releases/tag/1.14)</li><li>[k8 0.2.5](https://github.com/attractivechaos/k8/releases/tag/0.2.5)</li><li>[caln50 01091f2](https://github.com/lh3/calN50/tree/01091f25bc24e17fbf0da3407ea24aa448c489ae)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/gfatools) |
 | hifiasm | <ul><li>[hifiasm 0.19.4](https://github.com/chhylp123/hifiasm/releases/tag/0.19.4)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/hifiasm) |
 | htslib | <ul><li>[htslib 1.14](https://github.com/samtools/htslib/releases/tag/1.14)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/htslib) |
-| paftools | <ul<li>[paftools 2.26-r1182-dirty](https://github.com/lh3/minimap2/blob/bc588c0eeb26426d0d90a93fb0877358a389c515/misc/paftools.js)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/align_hifiasm) |
-| parse-cohort | <ul><li>python 3.8.10; custom scripts</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/
-3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/parse-cohort) |
+| paftools | <ul><li>[paftools 2.26-r1182-dirty](https://github.com/lh3/minimap2/blob/bc588c0eeb26426d0d90a93fb0877358a389c515/misc/paftools.js)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/align_hifiasm) |
+| parse-cohort | <ul><li>python 3.8.10; custom scripts</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/parse-cohort) |
 | samtools | <ul><li>[samtools 1.14](https://github.com/samtools/samtools/releases/tag/1.14)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/samtools) |
 | yak | <ul><li>[yak 0.1](https://github.com/lh3/yak/releases/tag/v0.1)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/yak) |

workflows/main.wdl

@@ -86,7 +86,7 @@ workflow de_novo_assembly {
 
 	parameter_meta {
 		cohort: {help: "Sample information for the cohort"}
-		reference: {help: "Array of Reference genome data"}
+		references: {help: "Array of Reference genome data"}
 		backend: {help: "Backend where the workflow will be executed ['GCP', 'Azure', 'AWS', 'HPC']"}
 		zones: {help: "Zones where compute will take place; required if backend is set to 'AWS' or 'GCP'"}
 		aws_spot_queue_arn: {help: "Queue ARN for the spot batch queue; required if backend is set to 'AWS'"}