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pharmcat

Billy Rowell edited this page Aug 9, 2024 · 1 revision

PharmCat subworkflow

flowchart TD
  phased_vcf[/"phased small variant VCF"/] --> preprocess["pharmcat preprocess"]
  aBAM[/"haplotagged BAM"/] --> filter["filter preprocessed VCF"]
  preprocess --> filter
  filter --> pharmcat["PharmCat"]
  pharmcat --> outputs[/"PharmCat outputs"/]
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PacBio WGS Variant Pipeline

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