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PacificBiosciences / HiFi-human-WGS-WDL Public

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Gracefully handle low depth samples with StarPhase/PharmCAT#176

Merged

williamrowell merged 7 commits intodevelop-v2PacificBiosciences/HiFi-human-WGS-WDL:develop-v2from fix/remove_starphase_nocallsPacificBiosciences/HiFi-human-WGS-WDL:fix/remove_starphase_nocallsCopy head branch name to clipboard

Dec 20, 2024

+126-85

Conversation Commits7 (7)Checks Files changed

Commits

Commits on Dec 20, 2024

Filter NO_READS no-call lines from StarPhase input to PharmCAT.
williamrowell
committed
update wdl-ci config file after successful tests

github-actions[bot]
authored and
williamrowell
committed
Only attempt to run PharmCAT if at least one PharmCAT region has depth > pharmcat_min_coverage
williamrowell
committed
update wdl-ci config file after successful tests

github-actions[bot]
authored and
williamrowell
committed
Added test for exclusion of NO_READS.
williamrowell
committed
update wdl-ci config file after successful tests

github-actions[bot]
authored and
williamrowell
committed
update wdl-ci config file after successful tests

github-actions[bot]
authored and
williamrowell
committed

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