Next minor release.

[williamrowell]

• Support input BAMs without basemods. Reads without basemods will not contribute to basemod pileups.
• Support input BAMs without rq tags. rq will not be calculated for these reads, but the reads will be aligned for downstream processes.
• Update to pbmm2 1.16.99 prerelease. Fixes behavior where SA tags were not stripped from aligned input.
• Updated to TRGT v1.4.1.
  • Increased memory for trgt task to better support larger catalogs with lower complexity motifs.
  • Added the max_depth parameter and limited to 50 to reduce memory usage for high depth low complexity loci.
  • Reduced the number of samtools sort threads to lower total memory used for sort.
• Remove StarPhase outputs that are not allowed as PharmCAT input (Feature request: PharmCAT accepts no-call result from outside call file PharmGKB/PharmCAT#204)
  • NO_READS is used in StarPhase output to indicate no-calls.
  • NO_MATCH is used when StarPhase can't match the variants to a known allele.
  • This workaround removes NO_READS/NO_MATCH outputs.
• Only attempt to run PharmCAT if at least one PharmCAT region has depth > pharmcat_min_coverage

[juniper-lake]

it looks right to me