Next Release #103
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Next Release #103
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williamrowell
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Dec 15, 2023
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williamrowell
commented
- pbmm2 1.13.1
- Suppress scary index warnings from BAM stats script
- TRGT 0.7.0
- Paraphase 3.0.0
- DeepVariant 1.6.0
- Custom DeepVariant models are now passed as tarballs
New container also has updated pysam script with silenced errors.
- paraphase_vcfs now points to a tarball of VCFs; we implemented this change because there is a large, variable number of output VCFs, and we need a flatter output structure
feat: Update TRGT to 0.7.0
feat: Updated Paraphase to 3.0.0
feat: Update pbmm2 to 1.13.1
Most changes are internal to the DeepVariant subworkflow, except that custom models should now be passed as a tarball. Instructions are found in the README in `wdl-common/wdl/workflows/deepvariant/README.md`
feat: Update to DeepVariant v1.6.0
…-case fix: Handle missing output for paraphase.
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…-urls docs: Changed image references from relative to absolute so that they…
…-hpc Moving wdl-ci tests to HPC backend
feat(trgt): Updated to TRGT 0.8.0
Clarifications in documentation.
…ve-url fix: Change submodule url to relative.
docs: Corrected the Zenodo download URL.
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