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v0.9-alpha

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@proteinosome proteinosome released this 23 Dec 02:49
· 1 commit to v0.9_dev since this release

v0.9 changelog

  • Refactored codes, split sections into modules
  • Added GreenGenes 2024.10, updated GTDB to r220, and Silva to 138.2, please rerun download_db to get the latest version
  • Added new parameter --db_to_prioritize to allow users to specify which database to prioritize for taxonomy assignment.
    • Prioritization of assignment by default is now GG2, then GTDB, then Silva.
  • Attempt to make tmpdir and cachedir more robust for QIIME2-related processes
    • TMPDIR is now set to the current working directory
  • Update QIIME2 to 2024.10 version. Workflow tested with Nextflow 24.11.0
  • Switched to using QIIME2 official container instead of self-built one.