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Allow splitting samples into group for dada2 noise (pool column in metadata TSV, see
GitHub documentation here).
#22: Added --publish_dir_mode to allow users to specify if they want the outputs in
other modes such as hardcopy instead of the default Nextflow behaviour (absolute symlinks).
Handle a minor bug in visualize_biom.Rmd script whereby if the samples are extremely
similar to each other, MDS plotting will fail.
Cleaned up code with small changes to allow pipeline to run on AWS. Big thanks to
collaborator from AGRF Australia for initiating, testing and providing feedbacks.