build based on c84cb0a

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-07-10T07:38:32","documenter_version":"1.5.0"}}
+{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-07-16T15:24:19","documenter_version":"1.5.0"}}

dev/man/Blankenbach/index.html

@@ -207,4 +207,4 @@
 Colorbar(fig[2,4], h4)
 linkaxes!(ax1, ax2, ax3, ax4)
 save(joinpath(figdir, "$(it).png"), fig)
-fig</code></pre><h3 id="Final-model"><a class="docs-heading-anchor" href="#Final-model">Final model</a><a id="Final-model-1"></a><a class="docs-heading-anchor-permalink" href="#Final-model" title="Permalink"></a></h3><p>Temperature field <img src="../../assets/Blankenbach_Temp.png" alt="Temperature"/></p><p>And time history of the rms-velocity and Nusselt number <img src="../../assets/Blankenbach_Time_Series_V_Nu.png" alt="time series"/></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../advection/">« Advection</a><a class="docs-footer-nextpage" href="../ShearBands/">Shear Bands »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Wednesday 10 July 2024 07:38">Wednesday 10 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+fig</code></pre><h3 id="Final-model"><a class="docs-heading-anchor" href="#Final-model">Final model</a><a id="Final-model-1"></a><a class="docs-heading-anchor-permalink" href="#Final-model" title="Permalink"></a></h3><p>Temperature field <img src="../../assets/Blankenbach_Temp.png" alt="Temperature"/></p><p>And time history of the rms-velocity and Nusselt number <img src="../../assets/Blankenbach_Time_Series_V_Nu.png" alt="time series"/></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../advection/">« Advection</a><a class="docs-footer-nextpage" href="../ShearBands/">Shear Bands »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Tuesday 16 July 2024 15:24">Tuesday 16 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/man/ShearBands/index.html

@@ -75,8 +75,8 @@
         free_slip = (left = true, right = true, top = true, bot = true),
         no_slip   = (left = false, right = false, top = false, bot=false),
     )
-    stokes.V.Vx .= PTArray([ x*εbg for x in xvi[1], _ in 1:ny+2])
-    stokes.V.Vy .= PTArray([-y*εbg for _ in 1:nx+2, y in xvi[2]])
+    stokes.V.Vx .= PTArray(backend_JR)([ x*εbg for x in xvi[1], _ in 1:ny+2])
+    stokes.V.Vy .= PTArray(backend_JR)([-y*εbg for _ in 1:nx+2, y in xvi[2]])
     flow_bcs!(stokes, flow_bcs) # apply boundary conditions
     update_halo!(@velocity(stokes)...)
 </code></pre><h2 id="Pseuo-transient-coefficients"><a class="docs-heading-anchor" href="#Pseuo-transient-coefficients">Pseuo-transient coefficients</a><a id="Pseuo-transient-coefficients-1"></a><a class="docs-heading-anchor-permalink" href="#Pseuo-transient-coefficients" title="Permalink"></a></h2><pre><code class="language-julia hljs">pt_stokes   = PTStokesCoeffs(li, di; ϵ=1e-4,  CFL = 1 / √2.1)</code></pre><h2 id="Just-before-solving-the-problem..."><a class="docs-heading-anchor" href="#Just-before-solving-the-problem...">Just before solving the problem...</a><a id="Just-before-solving-the-problem...-1"></a><a class="docs-heading-anchor-permalink" href="#Just-before-solving-the-problem..." title="Permalink"></a></h2><p>In this benchmark we want to keep track of τII, the total time <code>ttot</code>, and the analytical elastic solution <code>sol</code></p><pre><code class="language-julia hljs"> solution(ε, t, G, η) = 2 * ε * η * (1 - exp(-G * t / η))</code></pre><p>and store their time history in the vectors:</p><pre><code class="language-julia hljs">    τII        = Float64[]
@@ -125,4 +125,4 @@
 hidexdecorations!(ax1)
 hidexdecorations!(ax3)
 save(joinpath(figdir, &quot;$(it).png&quot;), fig)
-fig</code></pre><h3 id="Final-model"><a class="docs-heading-anchor" href="#Final-model">Final model</a><a id="Final-model-1"></a><a class="docs-heading-anchor-permalink" href="#Final-model" title="Permalink"></a></h3><p>Shear Bands evolution in a 2D visco-elasto-plastic rheology model <img src="../../assets/movies/DP_nx2058_2D.gif" alt="Shearbands"/></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Blankenbach/">« Blankenbach</a><a class="docs-footer-nextpage" href="../subduction2D/setup/">Model setup »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Wednesday 10 July 2024 07:38">Wednesday 10 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+fig</code></pre><h3 id="Final-model"><a class="docs-heading-anchor" href="#Final-model">Final model</a><a id="Final-model-1"></a><a class="docs-heading-anchor-permalink" href="#Final-model" title="Permalink"></a></h3><p>Shear Bands evolution in a 2D visco-elasto-plastic rheology model <img src="../../assets/movies/DP_nx2058_2D.gif" alt="Shearbands"/></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Blankenbach/">« Blankenbach</a><a class="docs-footer-nextpage" href="../subduction2D/setup/">Model setup »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Tuesday 16 July 2024 15:24">Tuesday 16 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/man/boundary_conditions/index.html

@@ -21,4 +21,4 @@
 stokes.V.Vy .= PTArray(backend)([-y*εbg for _ in 1:nx+2, y in xvi[2]]) # Velocity in y direction</code></pre><p>Make sure to apply the set velocity to the boundary conditions. You do this by calling the <code>flow_bcs!</code> function,</p><pre><code class="language-julia hljs">flow_bcs!(stokes, flow_bcs)</code></pre><p>and then applying the velocities to the halo</p><pre><code class="language-julia hljs">update_halo!(@velocity(stokes)...)</code></pre><h3 id="Displacement-formulation"><a class="docs-heading-anchor" href="#Displacement-formulation">Displacement formulation</a><a id="Displacement-formulation-1"></a><a class="docs-heading-anchor-permalink" href="#Displacement-formulation" title="Permalink"></a></h3><pre><code class="language-julia hljs">stokes.U.Ux .= PTArray(backend)([ x*εbg*lx*dt for x in xvi[1], _ in 1:ny+2]) # Displacement in x direction
 stokes.U.Uy .= PTArray(backend)([-y*εbg*ly*dt for _ in 1:nx+2, y in xvi[2]]) # Displacement in y direction
 flow_bcs!(stokes, flow_bcs)</code></pre><p>Make sure to initialize the displacement according to the extent of your domain. Here, lx and ly are the domain lengths in the x and y directions, respectively. Also for the displacement formulation it is important that the displacement is converted to velocity before updating the halo. This can be done by calling the <code>displacement2velocity!</code> function.</p><pre><code class="language-julia hljs">displacement2velocity!(stokes, dt) # convert displacement to velocity
-update_halo!(@velocity(stokes)...)</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../equations/">« Equations</a><a class="docs-footer-nextpage" href="../advection/">Advection »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Wednesday 10 July 2024 07:38">Wednesday 10 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+update_halo!(@velocity(stokes)...)</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../equations/">« Equations</a><a class="docs-footer-nextpage" href="../advection/">Advection »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Tuesday 16 July 2024 15:24">Tuesday 16 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>