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Remove eofs #1621

Merged
merged 4 commits into from
Jan 25, 2024
Merged

Remove eofs #1621

merged 4 commits into from
Jan 25, 2024

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Zeitsperre
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@Zeitsperre Zeitsperre commented Jan 24, 2024

Pull Request Checklist:

  • This PR addresses an already opened issue (for bug fixes / features)
  • Tests for the changes have been added (for bug fixes / features)
    • (If applicable) Documentation has been added / updated (for bug fixes / features)
  • CHANGES.rst has been updated (with summary of main changes)
    • Link to issue (:issue:number) and pull request (:pull:number) has been added

What kind of change does this PR introduce?

  • The eofs library has been removed from the optional dependencies.
  • The empirical orthogonal functionality (xclim.sdba.properties.first_eof and associated test) has been removed from the code base.
  • CI builds no longer test eofs functionality.

Does this PR introduce a breaking change?

Yes. eofs has been completely removed since this violated its GPLv3 license. Associated functionality is reproducible by users

Other information:

Should we be offering users a note about how to migrate? I feel like it's not necessary.

@Zeitsperre Zeitsperre added standards / conventions Suggestions on ways forward priority Immediate priority dependencies Pull requests that update a dependency file labels Jan 24, 2024
@Zeitsperre Zeitsperre self-assigned this Jan 24, 2024
@Zeitsperre Zeitsperre requested review from huard and aulemahal January 24, 2024 20:43
@github-actions github-actions bot added sdba Issues concerning the sdba submodule. CI Automation and Contiunous Integration docs Improvements to documenation labels Jan 24, 2024
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Note
It appears that this Pull Request modifies the main.yml workflow.

On inspection, the XCLIM_TESTDATA_BRANCH environment variable is set to the most recent tag (v2023.12.14).

No further action is required.

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@aulemahal aulemahal left a comment

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What does @juliettelavoie think of this.
Were you using that property anywhere ? If yes, we'll need to reimplement it in a private script somewhere.

@github-actions github-actions bot added the approved Approved for additional tests label Jan 24, 2024
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coveralls commented Jan 24, 2024

Coverage Status

coverage: 90.303% (+0.004%) from 90.299%
when pulling 5dfa324 on remove-eofs
into a569e91 on master.

@juliettelavoie
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I don't have active scripts that use that property. I am okay to delete it without reimplementing it until we have a clear need for it.

CHANGES.rst Outdated Show resolved Hide resolved
@Zeitsperre Zeitsperre merged commit 36d49e9 into master Jan 25, 2024
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@Zeitsperre Zeitsperre deleted the remove-eofs branch January 25, 2024 20:54
Zeitsperre added a commit that referenced this pull request Jan 29, 2024
### What kind of change does this PR introduce?

* Drops Python3.8 references and marks Python3.9 as base requirement.
* Drops older `xarray` and `pandas` support.
* Updates documentation and CI for dropped Python3.8.
* Raises required versions of `scipy` and `numpy` (`1.9.0` and `1.20.0`,
respectively).
* Removes the `winter_storm` indice and indicator (deprecated in `xclim`
v0.46.0).
* Adopts the new syntax for frequency codes:
  - "A" is no more
  - Y -> YE, Q -> QE, M -> ME
  - H -> h, T -> min, S -> s, L -> ms, U -> us, N -> ns
* Addresses several `DeprecationWarning` and `RuntimeWarning` messages
related to `numpy`, `xarray`, and `pint`

### Does this PR introduce a breaking change?

**Yes**, Python3.8 is no longer supported and base dependency versions
have been augmented:
- `numpy>=1.20.0`
- `pandas>=2.2.0`
- `scipy>=1.9.0`
- `xarray>=2023.11.0`

### Other information:

~Python3.12 support is still not possible due to missing Python3.12
builds for `numba`. (This is being addressed in #1613)~ - This has been
addressed.

A Pull Request has been opened to address `DeprecationWarning`s stemming
from `numpy` calls in `eofs` (ajdawson/eofs#148;
`eofs` has been removed due to licensing-related issues (#1621))
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5 participants