warn, but skip over synonyms to unknown IDs

OpenTreeOfLife · Jul 10, 2024 · 8907e6d · 8907e6d
1 parent 05e69f3
commit 8907e6d
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/otc/taxonomy/taxonomy.cpp b/otc/taxonomy/taxonomy.cpp
@@ -936,6 +936,8 @@ void RichTaxonomy::read_ott_synonyms_stream(std::istream & synonyms_file) {
             if (!Taxonomy::tolerate_synonyms_to_unknown_id) {
                 throw;
             }
+            LOG(WARNING) << "skipping synonym \"" << name << "\" to unknown ID " << ott_id;
+            continue;
         }
         if (primary == nullptr) {
             num_syn_skipped++;