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JiayuanDing100 authored Aug 13, 2024
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## The official repository for "SpatialCTD: a large-scale TME spatial transcriptomic dataset to evaluate cell type deconvolution for immuno-oncology"

## NEWS
* [05/2023] Human Kidney dataset in SpatialCTD v1 is released!
* [04/2023] Human Lung and Liver datasets in SpatialCTD v1 are released!

## GNNDeconvolver Installation and Running

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If you find our work useful in your research, please consider citing our SpatialCTD paper:

```bibtex
@article{ding2023spatialctd,
title={SpatialCTD: a large-scale TME spatial transcriptomic dataset to evaluate cell type deconvolution for immuno-oncology},
author={Ding, Jiayuan and Venegas, Julian and Lu, Qiaolin and Wang, Yixin and Wu, Lidan and Jin, Wei and Wen, Hongzhi and Liu, Renming and Tang, Wenzhuo and Li, Zhaoheng and others},
journal={bioRxiv},
pages={2023--04},
year={2023},
publisher={Cold Spring Harbor Laboratory}
}
@article{ding2024spatialctd,
title={SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology},
author={Ding, Jiayuan and Li, Lingxiao and Lu, Qiaolin and Venegas, Julian and Wang, Yixin and Wu, Lidan and Jin, Wei and Wen, Hongzhi and Liu, Renming and Tang, Wenzhuo and others},
journal={Journal of Computational Biology},
year={2024},
publisher={Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New~…}
}
```

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