Feat: migration #6
Workflow file for this run
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| # Workflow adjusted from usethis::use_github_action("test-coverage") to just report coverage internally and not to publish to codecov | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| name: test-coverage-internal | |
| jobs: | |
| test-coverage-internal: | |
| runs-on: ubuntu-latest | |
| env: | |
| POSTGRES_PW: ${{secrets.TEST_POSTGRES_DB_PW}} | |
| GITHUB_PAT: ${{ secrets.ACTION_PAT || secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::covr | |
| any::xml2 | |
| any::dplyr | |
| any::knitr | |
| needs: coverage | |
| - name: Start local postgres server with Docker | |
| run: | | |
| docker pull postgres | |
| docker run --name my-postgres --env POSTGRES_PASSWORD=${{env.POSTGRES_PW}} --publish 5432:5432 --detach postgres | |
| - name: Test coverage | |
| run: | | |
| covr::package_coverage() |> | |
| covr::to_cobertura(filename = "cobertura.xml") | |
| xml <- xml2::read_xml("cobertura.xml") | |
| pkg_cov <- xml |> | |
| xml2::xml_find_first("packages/package") |> | |
| xml2::xml_attrs() |> | |
| dplyr::bind_rows() | |
| fnc_cov <- xml |> | |
| xml2::xml_find_first("packages/package") |> | |
| xml2::xml_find_all("classes/class") |> | |
| xml2::xml_attrs() |> | |
| lapply(dplyr::bind_rows) | |
| res <- list(pkg_cov, fnc_cov) |> | |
| dplyr::bind_rows() |> | |
| dplyr::transmute( | |
| Name = dplyr::coalesce(filename, name), | |
| `Coverage (%)` = round(as.numeric(`line-rate`)*100, digits = 2) | |
| ) |> | |
| knitr::kable() | |
| c("# Code coverage", res) |> | |
| writeLines(con = "coverage.md") | |
| shell: Rscript {0} | |
| - name: Stop and remove postgres server | |
| run: | | |
| docker stop my-postgres | |
| docker remove my-postgres | |
| - name: Add Coverage PR Comment | |
| uses: marocchino/sticky-pull-request-comment@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| recreate: true | |
| header: coverage | |
| path: coverage.md |