adjust to new ndx releae v0.0.004 (#394)

NovelaNeuro · May 27, 2020 · f34c867 · f34c867
1 parent 69e5884
commit f34c867
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Showing 18 changed files with 23 additions and 23 deletions.
diff --git a/meta.yaml b/meta.yaml
@@ -73,7 +73,7 @@ requirements:
       - zlib==1.2.11
       - rec_to_binaries==0.4.2.dev0
       - xmldiff==2.4
-      - ndx-fl-novela==0.0.003
+      - ndx-franklab-novela==0.0.004
 
 
 about:

diff --git a/rec_to_nwb/environment.yml b/rec_to_nwb/environment.yml
@@ -46,7 +46,7 @@ dependencies:
   - pyyaml
   - pytest
   - testfixtures
-  - ndx-fl-novela==0.0.003
+  - ndx-franklab-novela==0.0.004
   - pip:
       - xmldiff
       - rec-to-binaries==0.4.2.dev0

diff --git a/rec_to_nwb/processing/nwb/components/associated_files/associated_files_creator.py b/rec_to_nwb/processing/nwb/components/associated_files/associated_files_creator.py
@@ -1,4 +1,4 @@
-from ndx_fl_novela.associated_files import AssociatedFiles
+from ndx_franklab_novela.associated_files import AssociatedFiles
 
 
 class AssociatedFilesCreator:

diff --git a/rec_to_nwb/processing/nwb/components/device/device_factory.py b/rec_to_nwb/processing/nwb/components/device/device_factory.py
@@ -1,5 +1,5 @@
-from ndx_fl_novela.header_device import HeaderDevice
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.header_device import HeaderDevice
+from ndx_franklab_novela.probe import Probe
 from pynwb.device import Device
 
 from rec_to_nwb.processing.tools.validate_parameters import validate_parameters_not_none

diff --git a/rec_to_nwb/processing/nwb/components/device/shanks/shank_creator.py b/rec_to_nwb/processing/nwb/components/device/shanks/shank_creator.py
@@ -1,4 +1,4 @@
-from ndx_fl_novela.probe import Shank
+from ndx_franklab_novela.probe import Shank
 
 from rec_to_nwb.processing.tools.validate_parameters import validate_parameters_not_none
 

diff --git a/rec_to_nwb/processing/nwb/components/device/shanks_electrodes/shanks_electrode_creator.py b/rec_to_nwb/processing/nwb/components/device/shanks_electrodes/shanks_electrode_creator.py
@@ -1,4 +1,4 @@
-from ndx_fl_novela.probe import ShanksElectrode
+from ndx_franklab_novela.probe import ShanksElectrode
 
 from rec_to_nwb.processing.tools.validate_parameters import validate_parameters_not_none
 

diff --git a/rec_to_nwb/processing/nwb/components/electrode_group/electrode_group_factory.py b/rec_to_nwb/processing/nwb/components/electrode_group/electrode_group_factory.py
@@ -1,4 +1,4 @@
-from ndx_fl_novela.nwb_electrode_group import NwbElectrodeGroup
+from ndx_franklab_novela.nwb_electrode_group import NwbElectrodeGroup
 from pynwb.ecephys import ElectrodeGroup
 
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup

diff --git a/rec_to_nwb/processing/nwb/components/electrode_group/fl_electrode_group_manager.py b/rec_to_nwb/processing/nwb/components/electrode_group/fl_electrode_group_manager.py
@@ -1,4 +1,4 @@
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.probe import Probe
 
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_builder import FlElectrodeGroupBuilder
 from rec_to_nwb.processing.tools.beartype.beartype import beartype

diff --git a/rec_to_nwb/processing/nwb/components/electrode_group/fl_nwb_electrode_group_manager.py b/rec_to_nwb/processing/nwb/components/electrode_group/fl_nwb_electrode_group_manager.py
@@ -1,4 +1,4 @@
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.probe import Probe
 
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_builder import FlNwbElectrodeGroupBuilder

diff --git a/rec_to_nwb/scripts/nwb_eseries_timestamps_visualization.py b/rec_to_nwb/scripts/nwb_eseries_timestamps_visualization.py
@@ -2,9 +2,9 @@
 import matplotlib.pyplot as plt
 from pynwb import NWBHDF5IO
 
-from ndx_fl_novela.apparatus import Apparatus, Edge, Node
-from ndx_fl_novela.header_device import HeaderDevice
-from ndx_fl_novela.ntrode import NTrode
+from ndx_franklab_novela.apparatus import Apparatus, Edge, Node
+from ndx_franklab_novela.header_device import HeaderDevice
+from ndx_franklab_novela.ntrode import NTrode
 
 nwb_file = NWBHDF5IO('rec_to_nwb/rec_to_nwb/test/beans20190718.nwb', 'r')
 nwbfile_read = nwb_file.read()

diff --git a/rec_to_nwb/test/processing/associated_files/test_associatedFilesCreator.py b/rec_to_nwb/test/processing/associated_files/test_associatedFilesCreator.py
@@ -1,7 +1,7 @@
 import os
 import unittest
 
-from ndx_fl_novela.associated_files import AssociatedFiles
+from ndx_franklab_novela.associated_files import AssociatedFiles
 
 from rec_to_nwb.processing.nwb.components.associated_files.associated_files_creator import AssociatedFilesCreator
 from rec_to_nwb.processing.nwb.components.associated_files.fl_associated_file import FlAssociatedFile

diff --git a/rec_to_nwb/test/processing/device/shank/test_flShankManager.py b/rec_to_nwb/test/processing/device/shank/test_flShankManager.py
@@ -1,7 +1,7 @@
 from unittest import TestCase
 from unittest.mock import Mock
 
-from ndx_fl_novela.probe import ShanksElectrode
+from ndx_franklab_novela.probe import ShanksElectrode
 from testfixtures import should_raise
 
 from rec_to_nwb.processing.exceptions.none_param_exception import NoneParamException

diff --git a/rec_to_nwb/test/processing/device/test_deviceFactory.py b/rec_to_nwb/test/processing/device/test_deviceFactory.py
@@ -1,8 +1,8 @@
 from unittest import TestCase
 from unittest.mock import Mock
 
-from ndx_fl_novela.header_device import HeaderDevice
-from ndx_fl_novela.probe import Probe, Shank
+from ndx_franklab_novela.header_device import HeaderDevice
+from ndx_franklab_novela.probe import Probe, Shank
 from pynwb.device import Device
 from testfixtures import should_raise
 

diff --git a/rec_to_nwb/test/processing/device/test_deviceInjector.py b/rec_to_nwb/test/processing/device/test_deviceInjector.py
@@ -3,8 +3,8 @@
 from unittest.mock import Mock
 
 from dateutil.tz import tzlocal
-from ndx_fl_novela.header_device import HeaderDevice
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.header_device import HeaderDevice
+from ndx_franklab_novela.probe import Probe
 from pynwb import NWBFile
 from pynwb.device import Device
 from testfixtures import should_raise

diff --git a/rec_to_nwb/test/processing/device/test_flProbeManager.py b/rec_to_nwb/test/processing/device/test_flProbeManager.py
@@ -2,7 +2,7 @@
 from unittest import TestCase
 from unittest.mock import Mock
 
-from ndx_fl_novela.probe import Shank
+from ndx_franklab_novela.probe import Shank
 from testfixtures import should_raise
 
 from rec_to_nwb.processing.nwb.components.device.fl_probe import FlProbe

diff --git a/rec_to_nwb/test/processing/electrode_group/test_electrodeGroupFactory.py b/rec_to_nwb/test/processing/electrode_group/test_electrodeGroupFactory.py
@@ -6,7 +6,7 @@
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group import FlNwbElectrodeGroup
 
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.probe import Probe
 from pynwb.device import Device
 from testfixtures import should_raise
 

diff --git a/rec_to_nwb/test/processing/electrode_group/test_flElectrodeGroupManager.py b/rec_to_nwb/test/processing/electrode_group/test_flElectrodeGroupManager.py
@@ -5,7 +5,7 @@
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group_manager import FlElectrodeGroupManager
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_electrode_group import FlElectrodeGroup
 
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.probe import Probe
 from testfixtures import should_raise
 
 path = os.path.dirname(os.path.abspath(__file__))

diff --git a/rec_to_nwb/test/processing/electrode_group/test_flNwbElectrodeGroupManager.py b/rec_to_nwb/test/processing/electrode_group/test_flNwbElectrodeGroupManager.py
@@ -5,7 +5,7 @@
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group import FlNwbElectrodeGroup
 from rec_to_nwb.processing.nwb.components.electrode_group.fl_nwb_electrode_group_manager import FlNwbElectrodeGroupManager
 
-from ndx_fl_novela.probe import Probe
+from ndx_franklab_novela.probe import Probe
 from testfixtures import should_raise
 
 path = os.path.dirname(os.path.abspath(__file__))