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v0.5.1: Default clip_to_obs to False (#63)

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@CaibinSh CaibinSh released this 02 Mar 15:10
· 132 commits to main since this release
3e66569

Feature

  • Update dependencies (40e906e)
  • Default clip_to_obs to False, as it leads to overall over-correction (944f09a)
  • Support AnnData object as the input (24a1ab6)
  • Estimate the ambient profile for all features together, add ambient_profile_all to adata.uns (e1913fd)

Fix

  • setup: Change sample and n_batch parameters to allow using all droplets by default (4f5e05f)
  • setup: Fix setupdata (63afe9d)

Documentation