Develop

.github/workflows/semantic-release.yaml

@@ -18,10 +18,10 @@ jobs:
     steps:
     - uses: actions/checkout@v3
       with:
+        ref: main
         fetch-depth: 0
+
     - name: Python Semantic Release
       uses: relekang/python-semantic-release@master
       with:
-        github_token: ${{ secrets.GITHUB_TOKEN }}
-        repository_username: __token__
-        repository_password: ${{ secrets.PYPI_TOKEN }}
+        github_token: ${{ secrets.GITHUB_TOKEN }}

.readthedocs.yaml

@@ -3,7 +3,7 @@ version: 2
 build:
   os: "ubuntu-20.04"
   tools:
-    python: "3.10"
+    python: "3.11"
 
 sphinx:
   configuration: docs/conf.py

docs/requirements.txt

@@ -1,7 +1,7 @@
 jinja2<3.1.0
 myst_parser
 nbsphinx
-sphinx-gallery
+sphinx-gallery<0.17.0
 sphinx-argparse
 sphinx-disqus
 autodocsumm

docs/tutorials/index.rst

@@ -13,6 +13,7 @@ Run scar with Python API
    scAR_tutorial_denoising_CITEseq
    scAR_tutorial_denoising_scRNAseq
    scAR_tutorial_denoising_scATACseq
+   scAR_tutorial_batch_denoising_scRNAseq
 
 Run scar with the command line tool
 ---------------------------------