fix: update python=3.8.6 -> python=3.10 to fix numpy & pandas conflict

Novartis · May 23, 2024 · d018c90 · d018c90
1 parent 14b430b
commit d018c90
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Showing 4 changed files with 6 additions and 4 deletions.
diff --git a/docs/Installation.rst b/docs/Installation.rst
@@ -18,7 +18,7 @@ Conda install
     
 4, Install scar::
 
-    conda install -c bioconda scar
+    conda install bioconda::scar
     
 5, Activate the scar conda environment::
 

diff --git a/scar-cpu.yml b/scar-cpu.yml
@@ -4,7 +4,7 @@ channels:
 - pytorch
 - conda-forge
 dependencies:
-- conda-forge::python>=3.8.6
+- conda-forge::python>=3.10
 - nvidia::cudatoolkit>=11.1
 - pytorch::pytorch>=1.10.0
 - pytorch::torchvision>=0.9.0

diff --git a/scar-gpu.yml b/scar-gpu.yml
@@ -4,7 +4,7 @@ channels:
 - pytorch
 - conda-forge
 dependencies:
-- conda-forge::python>=3.8.6
+- conda-forge::python>=3.10
 - nvidia::cudatoolkit>=11.1
 - pytorch::pytorch>=1.10.0
 - pytorch::torchvision>=0.9.0

diff --git a/setup.cfg b/setup.cfg
@@ -16,7 +16,7 @@ classifiers =
 
 [options]
 packages = find:
-python_requires = >=3.8
+python_requires = >=3.10
 zip_safe = False
 include_package_data = True
 install_requires =
@@ -27,6 +27,8 @@ install_requires =
     seaborn >= 0.11.2
     scikit-learn >= 1.0.1
     pyro-ppl >= 1.8.0
+    anndata
+    scanpy
 package_dir=
     =.