refactor: Refactor functions for compatibility with scipy 1.14

Novartis · Jul 24, 2024 · 7ada773 · 7ada773
1 parent 73f737c
commit 7ada773
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scar/main/_setup.py b/scar/main/_setup.py
@@ -142,7 +142,7 @@ def setup_anndata(
         )
         for b in range(n_batch):
             try:
-                count_batch = raw_adata[batch_idx == b].X.astype(int).A
+                count_batch = raw_adata[batch_idx == b].X.astype(int).toarray()
             except MemoryError:
                 raise MemoryError("use more batches by setting a higher n_batch")
             log_prob_batch = Multinomial(