update examples (#211) #368
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| name: CI-Test | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| release: | |
| types: [published, created] | |
| jobs: | |
| lint: | |
| # pull requests are a duplicate of a branch push if within the same repo. | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| - uses: pre-commit/[email protected] | |
| test: | |
| # pull requests are a duplicate of a branch push if within the same repo. | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| name: Tests | |
| runs-on: ${{ matrix.host-os }} | |
| needs: lint | |
| strategy: | |
| matrix: | |
| # host-os: ["ubuntu-latest", "macos-13", "macos-14"] | |
| host-os: ["ubuntu-latest"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout the code | |
| uses: actions/checkout@v4 | |
| - name: Set env vars | |
| run: | | |
| export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/} # just the repo, as opposed to org/repo | |
| echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV | |
| python_version="${{ matrix.python-version }}" | |
| export PYTHON_VERSION_NODOT="${python_version//\./}" | |
| echo "PYTHON_VERSION_NODOT=${PYTHON_VERSION_NODOT}" >> $GITHUB_ENV | |
| - name: Set MacOS Deployment Target | |
| if: runner.os == 'macOS' | |
| run: | | |
| export MACOSX_DEPLOYMENT_TARGET="10.15" | |
| echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV | |
| - name: Install micromamba with build dependencies | |
| uses: mamba-org/setup-micromamba@v1 | |
| # if: runner.os == 'macOS' | |
| with: | |
| init-shell: bash | |
| environment-name: build-env | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| arpack=*=mpi_openmpi* | |
| gfortran | |
| openmpi=4 | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # # if: matrix.host-os != 'macos-latest' | |
| # if: runner.os != 'macOS' | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| - name: Install MacOS dependencies | |
| if: runner.os == 'macOS' | |
| run: | | |
| set -vxeuo pipefail | |
| brew install tree | |
| # python -m pip install delocate | |
| - name: Install dependencies | |
| run: | | |
| set -vxeuo pipefail | |
| bash ./scripts/install-deps.sh | |
| tree . | |
| ls -Al . | |
| ls -Al ./dist/ | |
| # - name: Delocate wheels for MacOS | |
| # if: runner.os == 'macOS' | |
| # run: | | |
| # set -vxeuo pipefail | |
| # delocate-wheelpython -v ./dist/${{ env.REPOSITORY_NAME }}-*-cp${PYTHON_VERSION_NODOT}*.whl | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.REPOSITORY_NAME }}-wheels | |
| path: dist/* | |
| - name: Test with pytest | |
| run: | | |
| set -vxeuo pipefail | |
| bash ./scripts/run-tests.sh | |
| - name: Build Docs | |
| run: | | |
| set -vxeuo pipefail | |
| bash ./scripts/build-docs.sh | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.REPOSITORY_NAME }}-${{ matrix.python-version }}-${{ matrix.host-os }}-docs | |
| path: docs/build/html/ | |
| publish-docs: | |
| if: github.repository_owner == 'NSLS-II' && github.ref == 'refs/heads/master' | |
| name: Publish docs | |
| needs: test | |
| runs-on: ${{ matrix.host-os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| host-os: ["ubuntu-latest"] | |
| fail-fast: false | |
| steps: | |
| - name: Set env vars | |
| run: | | |
| export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/} # just the repo, as opposed to org/repo | |
| echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV | |
| - name: Download docs from GitHub artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: ${{ env.REPOSITORY_NAME }}-${{ matrix.python-version }}-${{ matrix.host-os }}-docs | |
| path: docs/build/html/ | |
| - name: Deploy documentation to nsls-ii.github.io | |
| # We pin to the SHA, not the tag, for security reasons. | |
| # https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/security-hardening-for-github-actions#using-third-party-actions | |
| uses: peaceiris/actions-gh-pages@bbdfb200618d235585ad98e965f4aafc39b4c501 # v3.7.3 | |
| with: | |
| deploy_key: ${{ secrets.ACTIONS_DOCUMENTATION_DEPLOY_KEY }} | |
| publish_branch: master | |
| publish_dir: ./docs/build/html | |
| external_repository: NSLS-II/NSLS-II.github.io | |
| destination_dir: ${{ env.REPOSITORY_NAME }} # just the repo name, without the "NSLS-II/" | |
| keep_files: true # Keep old files. | |
| force_orphan: false # Keep git history. | |
| publish-to-pypi: | |
| # Hints from: | |
| # - https://github.com/pypa/gh-action-pypi-publish/discussions/28 | |
| # - https://github.com/Lightning-AI/lightning/blob/master/.github/workflows/release-pypi.yml | |
| if: github.event_name == 'release' | |
| name: Publish to PyPI | |
| needs: test | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Set env vars | |
| run: | | |
| export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/} # just the repo, as opposed to org/repo | |
| echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV | |
| - uses: actions/checkout@v3 | |
| - name: Download wheels from GitHub artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ${{ env.REPOSITORY_NAME }}-wheels | |
| path: dist/ | |
| - name: Publish wheels to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: ./dist/ |