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feat(ci): switch to micromamba from conda
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ravnoor committed Dec 15, 2024
1 parent fe91a19 commit b75699a
Showing 1 changed file with 5 additions and 9 deletions.
14 changes: 5 additions & 9 deletions .github/workflows/test-inference-pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -19,21 +19,17 @@ jobs:

- name: Install dependencies for deepMask
run: |
eval "$(conda shell.bash hook)"
conda create -n preprocess python=3.8
conda activate preprocess
eval "$(micromamba shell hook -s posix)"
micromamba create -n preprocess python=3.8 --yes
micromamba activate preprocess
python -m pip install -r ./app/deepMask/app/requirements.txt
conda deactivate
micromamba deactivate
- name: Install dependencies for deepFCD
run: |
eval "$(conda shell.bash hook)"
conda create -n deepFCD python=3.8
conda activate deepFCD
python -m pip install -r ./app/requirements.txt
conda install -c conda-forge pygpu==0.7.6
micromamba install -c conda-forge pygpu==0.7.6 --yes
pip cache purge
conda deactivate
- name: Download openneuro.org dataset to test the inference pipeline # https://openneuro.org/datasets/ds004199/versions/1.0.5
run: |
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