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revert to previous config
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ravnoor committed Sep 19, 2023
1 parent be03393 commit a85fd44
Showing 1 changed file with 6 additions and 7 deletions.
13 changes: 6 additions & 7 deletions .github/workflows/test-inference-pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -33,14 +33,13 @@ jobs:
- name: Download openneuro.org dataset to test the inference pipeline # https://openneuro.org/datasets/ds004199/versions/1.0.5
run: |
mkdir -p ~/io/${CI_TESTING_PATIENT_ID}
PATIENT_ID=sub-00055
BASE_URL=https://s3.amazonaws.com/openneuro.org/ds004199/${PATIENT_ID}/anat
mkdir -p ~/io/${PATIENT_ID}
echo "retrieving single-patient multimodal dataset.."
wget ${BASE_URL}/${CI_TESTING_PATIENT_ID}_acq-sag111_T1w.nii.gz\?versionId\=IKGWDiLR7B7ls2yPVyycJo.6R1Sqhujf -O ~/io/${CI_TESTING_PATIENT_ID}/t1.nii.gz
wget ${BASE_URL}/${CI_TESTING_PATIENT_ID}_acq-tse3dvfl_FLAIR.nii.gz\?versionId\=HmzYoUuYkdbyd8jkpdJjVkZydRHNSqUX -O ~/io/${CI_TESTING_PATIENT_ID}/flair.nii.gz
wget ${BASE_URL}/${CI_TESTING_PATIENT_ID}_acq-tse3dvfl_FLAIR_roi.nii.gz\?versionId\=ulmEU3nb8WCvGwcwTbkcdNSVr07PMPQN -O ~/io/${CI_TESTING_PATIENT_ID}/label.nii.gz
env:
CI_TESTING_PATIENT_ID: "sub-00055"
BASE_URL: "https://s3.amazonaws.com/openneuro.org/ds004199/${CI_TESTING_PATIENT_ID}/anat"
wget ${BASE_URL}/${PATIENT_ID}_acq-sag111_T1w.nii.gz\?versionId\=IKGWDiLR7B7ls2yPVyycJo.6R1Sqhujf -O ~/io/sub-00055/t1.nii.gz
wget ${BASE_URL}/${PATIENT_ID}_acq-tse3dvfl_FLAIR.nii.gz\?versionId\=HmzYoUuYkdbyd8jkpdJjVkZydRHNSqUX -O ~/io/sub-00055/flair.nii.gz
wget ${BASE_URL}/${PATIENT_ID}_acq-tse3dvfl_FLAIR_roi.nii.gz\?versionId\=ulmEU3nb8WCvGwcwTbkcdNSVr07PMPQN -O ~/io/sub-00055/label.nii.gz
- name: Run inference for deepFCD
run: |
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