7.improve CIworkflow #29
Workflow file for this run
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| name: conda-env-create-and-pytest | |
| on: [pull_request] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Create catalogbuilder environment | |
| run: | | |
| # create environment catalogbuilder will be installed into | |
| conda env create -f environment.yml --name catalogbuilder | |
| # put conda env binaries in GITHUB_PATH | |
| echo $CONDA/envs/catalogbuilder/bin >> $GITHUB_PATH | |
| # install catalogbuilder | |
| $CONDA/envs/catalogbuilder/bin/python -m pip install --prefix $CONDA/envs/catalogbuilder/bin . | |
| - name: Run pytest in catalogbuilder environment | |
| run: | | |
| which python | |
| python --version | |
| $CONDA/envs/catalogbuilder/bin/python --version | |
| # which pytest | |
| $CONDA/envs/catalogbuilder/bin/pytest catalogbuilder | |
| - name: Make sample data | |
| run: | | |
| which python | |
| python catalogbuilder/tests/make_sample_data.py | |
| - name: Generate catalog | |
| run: | | |
| which python | |
| python catalogbuilder/scripts/gen_intake_gfdl.py archive/am5/am5/am5f3b1r0/c96L65_am5f3b1r0_pdclim1850F/gfdl.ncrc5-deploy-prod-openmp/pp gfdl_autotest | |
| - name: Generate catalog with yaml | |
| run: | | |
| which python | |
| python catalogbuilder/scripts/gen_intake_gfdl.py --config catalogbuilder/tests/test_config.yaml | |
| - name: upload-artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: workflow-artifacts1 | |
| path: | | |
| gfdl_autotest.csv | |
| gfdl_autotest.json | |
| cats/gfdl_autotest_from_yaml.csv | |
| cats/gfdl_autotest_from_yaml.json | |
| - name: Download all workflow run artifacts | |
| uses: actions/download-artifact@v4 | |
| - name: Run pytest with downloaded artifacts | |
| run: | | |
| $CONDA/envs/catalogbuilder/bin/pytest -v --runxfail catalogbuilder | |
| - name: Test for completeness | |
| run: | | |
| which python | |
| python catalogbuilder/scripts/test_catalog.py -tf gfdl_autotest.json catalogbuilder/cats/gfdl_template.json | |
| python catalogbuilder/scripts/test_catalog.py -tf catalogbuilder/cats/gfdl_autotest_from_yaml.json |