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Add option to use non-glorys names in boundary tools #124

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merged 2 commits into from
Dec 11, 2024
Merged

Add option to use non-glorys names in boundary tools #124

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1b764a7
Added option to specify name of concatenated files in write_glorys_bo…
Dec 9, 2024
3377bba
Merge branch 'main' into feature/issue-123-naming-conventions
yichengt900 Dec 11, 2024
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5 changes: 5 additions & 0 deletions tools/boundary/glorys_obc.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,11 @@ glorys_dir: '/work/acr/glorys/GLOBAL_MULTIYEAR_PHY_001_030/daily/filled'
output_dir: './outputs'
hgrid: '../../datasets/grid/ocean_hgrid.nc'
ncrcat_years: true # Set to false if you want to skip ncrcat_years
ncrcat_names:
- 'thetao'
- 'so'
- 'zos'
- 'uv'
segments:
- id: 1
border: 'south'
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17 changes: 12 additions & 5 deletions tools/boundary/write_glorys_boundary.py
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Expand Up @@ -52,11 +52,13 @@ def write_year(year, glorys_dir, segments, variables, is_first_year=False, is_la
seg.regrid_tracer(glorys['zos'], suffix=year, flood=False)


def ncrcat_years(nsegments, output_dir, variables):
for var in variables:
for seg in range(1, nsegments+1):
run([f'ncrcat -O {var}_{seg:03d}_* {var}_{seg:03d}.nc'], cwd=output_dir, shell=True)
def ncrcat_years(nsegments, output_dir, variables, ncrcat_names):
if not ncrcat_names:
ncrcat_names = variables[:]

for var,var_name in zip(variables,ncrcat_names):
for seg in range(1, nsegments+1):
run([f'ncrcat -O {var}_{seg:03d}_* {var_name}_{seg:03d}.nc'], cwd=output_dir, shell=True)

def main(config_file):
# Load configuration from YAML file
Expand All @@ -69,6 +71,7 @@ def main(config_file):
output_dir = config.get('output_dir', './outputs')
hgrid_file = config.get('hgrid', '../../datasets/grid/ocean_hgrid.nc')
ncrcat_years_flag = config.get('ncrcat_years', False)
ncrcat_names = config.get('ncrcat_names', [])

# Create output directory if it doesn't exist
if not path.exists(output_dir):
Expand All @@ -92,7 +95,11 @@ def main(config_file):

# Optional step: ncrcat_years
if ncrcat_years_flag:
ncrcat_years(len(segments), output_dir, variables)
assert len(ncrcat_names) == len(variables), ("Could not concatenate annual files because the the "
"number of file output names did not match the number "
"of variables provided. Please concatenate the files manually.")

ncrcat_years(len(segments), output_dir, variables, ncrcat_names)

if __name__ == '__main__':
# Set default config file name
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