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steffejr committed Mar 30, 2022
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<script src="https://cdnjs.cloudflare.com/ajax/libs/prism/1.23.0/plugins/autoloader/prism-autoloader.min.js"></script><!--replace-end-7--><!--replace-end-4--><!--replace-end-1--></head><body><div class="ui fluid container universe"><!--replace-start-2--><!--replace-start-3--><!--replace-start-6--><div class="ui text container" id="zettel-container" style="position: relative"><div class="zettel-view"><article class="ui raised attached segment zettel-content"><div class="pandoc"><h1 id="title-h1">References to MatLab Code</h1><h2 id="fitprocessmodel"><a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/FitProcessModel.m">FitProcessModel</a></h2><ul><li>This is the function that performs the regression</li><li>It cycles over the Direct and Interaction matrices to create the regression equations.</li><li>It then fits the regresson equations using the function <a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/ProcessRegStats.m">ProcessRegStats</a><ul><li>This function performs the actual beta value estimation on lines 15 to 17 as follows: <code>design = x2fx(design);</code> <code>[Q,R] = qr(design,0);</code> <code>beta = R\(Q&#39;*y);</code></li><li>The rest of the file performs a lot of statistical values using the beta values</li></ul></li><li>The function contains a lot of info about handling the output files.</li><li>It then calculates the path values.<ul><li>It also calculates the standard error of the path values using this function: <a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/subfnCalculatePathSE.m">subfnCalculatePathSE</a></li></ul></li></ul><h2 id="testeronevoxelprocessbootstrap"><a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/testerOneVoxelProcessBootstrap.m">testerOneVoxelProcessBootstrap</a></h2><p>This function performs all analyses on a single data location.</p><ul><li>It calculates the point estimate first on line 14.<ul><li>The point estimate is the model fit BEFORE any bootstrap resampling is done</li></ul></li><li>It also performs the bootstrapping here:<ul><li><a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/BootStrapFunction.m">BootStrapFunction</a></li></ul></li></ul></div></article><nav class="ui attached segment deemphasized backlinksPane" id="neuron-backlinks-pane"><h3 class="ui header">Backlinks</h3><ul class="backlinks"><li><span class="zettel-link-container cf"><span class="zettel-link"><a href=".">Mediation and Moderation</a></span></span><ul class="context-list" style="zoom: 85%;"><li class="item"><div class="pandoc"><span class="zettel-link-container cf"><span class="zettel-link" title="Zettel: References to MatLab Code"><a href="References_to_MatLab_Code">References to MatLab Code</a></span></span></div></li><li class="item"><div class="pandoc">Add pointers from the MatLab –&gt; <span class="zettel-link-container cf"><span class="zettel-link" title="Zettel: References to MatLab Code"><a href="References_to_MatLab_Code">References to MatLab Code</a></span></span></div></li></ul></li></ul></nav><nav class="ui bottom attached icon compact inverted menu orange" id="neuron-nav-bar"><!--replace-start-9--><a class="item" href="." title="Home"><i class="home icon"></i></a><!--replace-end-9--><a class="item" href="https://github.com/NCMlab/MediationModerationNotes/edit/master/./References to MatLab Code.md" title="Edit this page"><i class="edit icon"></i></a><a class="right item" href="impulse" title="Open Impulse"><i class="wave square icon"></i></a></nav></div></div><!--replace-end-6--><!--replace-end-3--><!--replace-end-2--><div class="ui center aligned container footer-version"><div class="ui tiny image"><a href="https://neuron.zettel.page"><img alt="logo" src="https://raw.githubusercontent.com/srid/neuron/master/assets/neuron.svg" title="Generated by Neuron 1.9.35.3" /></a></div></div></div></body></html>
<script src="https://cdnjs.cloudflare.com/ajax/libs/prism/1.23.0/plugins/autoloader/prism-autoloader.min.js"></script><!--replace-end-7--><!--replace-end-4--><!--replace-end-1--></head><body><div class="ui fluid container universe"><!--replace-start-2--><!--replace-start-3--><!--replace-start-6--><div class="ui text container" id="zettel-container" style="position: relative"><div class="zettel-view"><article class="ui raised attached segment zettel-content"><div class="pandoc"><h1 id="title-h1">References to MatLab Code</h1><h2 id="fitprocessmodel"><a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/FitProcessModel.m">FitProcessModel</a></h2><ul><li>This is the function that performs the regression</li><li>It cycles over the Direct and Interaction matrices to create the regression equations.</li><li>It then fits the regresson equations using the function <a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/ProcessRegStats.m">ProcessRegStats</a><ul><li>This function performs the actual beta value estimation on lines 15 to 17 as follows: <code>design = x2fx(design);</code> <code>[Q,R] = qr(design,0);</code> <code>beta = R\(Q&#39;*y);</code></li><li>The rest of the file performs a lot of statistical values using the beta values</li></ul></li><li>The function contains a lot of info about handling the output files.</li><li>It then calculates the path values.<ul><li>It also calculates the standard error of the path values using this function: <a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/subfnCalculatePathSE.m">subfnCalculatePathSE</a></li></ul></li></ul><h2 id="testeronevoxelprocessbootstrap"><a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/testerOneVoxelProcessBootstrap.m">testerOneVoxelProcessBootstrap</a></h2><p>This function performs all analyses on a single data location.</p><ul><li>It calculates the point estimate first on line 14.<ul><li>The point estimate is the model fit BEFORE any bootstrap resampling is done</li></ul></li><li>It also performs the bootstrapping here:<ul><li><a href="https://github.com/NCMlab/ProcessModelsNeuroImage/blob/master/FinalCode/BootStrapFunction.m">BootStrapFunction</a></li></ul></li></ul></div></article><nav class="ui attached segment deemphasized backlinksPane" id="neuron-backlinks-pane"><h3 class="ui header">Backlinks</h3><ul class="backlinks"><li><span class="zettel-link-container cf"><span class="zettel-link"><a href=".">Mediation and Moderation</a></span></span><ul class="context-list" style="zoom: 85%;"><li class="item"><div class="pandoc"><span class="zettel-link-container cf"><span class="zettel-link" title="Zettel: References to MatLab Code"><a href="References_to_MatLab_Code">References to MatLab Code</a></span></span></div></li></ul></li></ul></nav><nav class="ui bottom attached icon compact inverted menu orange" id="neuron-nav-bar"><!--replace-start-9--><a class="item" href="." title="Home"><i class="home icon"></i></a><!--replace-end-9--><a class="item" href="https://github.com/NCMlab/MediationModerationNotes/edit/master/./References to MatLab Code.md" title="Edit this page"><i class="edit icon"></i></a><a class="right item" href="impulse" title="Open Impulse"><i class="wave square icon"></i></a></nav></div></div><!--replace-end-6--><!--replace-end-3--><!--replace-end-2--><div class="ui center aligned container footer-version"><div class="ui tiny image"><a href="https://neuron.zettel.page"><img alt="logo" src="https://raw.githubusercontent.com/srid/neuron/master/assets/neuron.svg" title="Generated by Neuron 1.9.35.3" /></a></div></div></div></body></html>
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