Merge pull request #54 from NCI-GDC/feat/fix-import

Update depreciated import for py3.10

.gitlab-ci.yml

@@ -26,7 +26,7 @@ release:
 .python_versions:
   parallel:
     matrix:
-      - REPO_PY_VERSION: [python3.8]
+      - REPO_PY_VERSION: [python3.8, python3.10]
 
 docker_build:
   rules:

maflib/header.py

@@ -15,7 +15,8 @@
 """
 
 import logging
-from collections import MutableMapping, OrderedDict
+from collections import OrderedDict
+from collections.abc import MutableMapping
 from copy import deepcopy
 from typing import TYPE_CHECKING, Any, Dict, Iterator, List, Optional, Tuple, Union
 

maflib/record.py

@@ -5,7 +5,7 @@
 """
 
 import logging
-from collections import MutableMapping
+from collections.abc import MutableMapping
 from typing import TYPE_CHECKING, Any, Dict, Iterator, List, Optional, Union
 
 from maflib.column import MafColumnRecord

tox.ini

@@ -14,8 +14,7 @@ skip_install =
 	false
 install_command = python -m pip install {opts} {packages}
 deps = 
-	-rdev-requirements.txt
-	-rrequirements.txt
+	pytest
 commands = pytest -vv {posargs}
 
 [testenv:dev]
@@ -40,8 +39,8 @@ commands =
 [testenv:cov]
 skip_install=True
 deps = 
-	-rdev-requirements.txt
-	-rrequirements.txt
+	coverage
+	pytest
 commands =
 	coverage run -m pytest tests/
 	coverage combine
@@ -52,16 +51,14 @@ commands =
 [testenv:flake8]
 skip_install=True
 deps = 
-	-rdev-requirements.txt
-	-rrequirements.txt
+	flake8
 commands = 
 	flake8 {env:package}/ tests/
 
 [testenv:type]
 skip_install = false
 deps=
-	-rrequirements.txt
-	-rdev-requirements.txt
+	mypy
 commands =
 	python -m mypy {env:package}/