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added build instructions for Derecho
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Aditya Dendukuri
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May 21, 2024
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@@ -72,7 +72,9 @@ The full example uses data files from the `data` directory, which is why you nee | |
``` | ||
cd /output | ||
cp -r /build/data . | ||
tuv-x /build/examples/full_config.json | ||
./tuv-x examples/tuv_5_4.json | ||
# or | ||
./tuv-x examples/ts1_tsmlt.json | ||
``` | ||
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Now, in your downloads folder, you should have to nc files, `photolysis_rate_constants.nc` and `dose_rates.nc`. | ||
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@@ -93,10 +95,56 @@ make -j 8 | |
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You will now have a runnable exectubable for `tuv-x` and the tests in the build directory. | ||
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`./tuv-x examples/full_config.json`. | ||
``` | ||
./tuv-x examples/tuv_5_4.json | ||
# or | ||
./tuv-x examples/ts1_tsmlt.json | ||
``` | ||
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Inspect the output file `photolysis_rate_constants.nc` to see the results! | ||
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## Build and run (Derecho supercomputer) | ||
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``` | ||
# reset module environment | ||
module purge | ||
# load required modules | ||
module load ncarenv/23.09 | ||
module load intel/2023.2.1 | ||
module load netcdf/4.9.2 | ||
module load ncarcompilers/1.0.0 | ||
module load cmake/3.26.3 | ||
module load mpi/2023.2.1 | ||
# build fortran JSON library | ||
cd /glade/derecho/scratch/<user-id>/ | ||
curl -LO https://github.com/jacobwilliams/json-fortran/archive/8.3.0.tar.gz | ||
tar -zxvf 8.3.0.tar.gz | ||
cd json-fortran-8.3.0 | ||
mkdir build | ||
cd build | ||
cmake -D SKIP_DOC_GEN:BOOL=TRUE -D CMAKE_INSTALL_PREFIX=/glade/derecho/scratch/$userx/json-fortran-8.3.0 .. | ||
make install | ||
# clone tuv-x repository | ||
cd /glade/derecho/scratch/<user-id>/ | ||
git clone [email protected]:NCAR/tuv-x.git | ||
# build tuv-x | ||
cd tuv-x | ||
mkdir build | ||
cd build | ||
export JSON_FORTRAN_HOME="/glade/derecho/scratch/<user-id>/json-fortran-8.3.0/jsonfortran-intel-8.3.0" | ||
cmake -D CMAKE_BUILD_TYPE=release -D ENABLE_MEMCHECK=OFF .. | ||
make -j 8 | ||
# run `tuv-x` executable on JSON executables in examples/ | ||
./tuv-x examples/tuv_5_4.json | ||
# or | ||
./tuv-x examples/ts1_tsmlt.json | ||
``` | ||
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## Install | ||
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After completing the previous step run `sudo make install`. | ||
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