added BLAS library specification in build script (#83)

* added BLAS library specification in build script

* Updated README with correct JSON config names

* added a note in etc/derecho/README.md regarding some tests note building with the Intel compiler

* added echo statements in the build scripts

* added TUV-X download in the build script

---------

Co-authored-by: Aditya Dendukuri <[email protected]>
Co-authored-by: Aditya Dendukuri <[email protected]>

README.md

@@ -72,7 +72,10 @@ The full example uses data files from the `data` directory, which is why you nee
 ```
 cd /output
 cp -r /build/data .
-tuv-x /build/examples/full_config.json
+# to use the standalone tool
+./tuv-x examples/tuv_5_4.json
+# or 
+./tuv-x examples/ts1_tsmlt.json
 ```
 
 Now, in your downloads folder, you should have to nc files, `photolysis_rate_constants.nc` and `dose_rates.nc`.
@@ -93,8 +96,12 @@ make -j 8
 
 You will now have a runnable exectubable for `tuv-x` and the tests in the build directory.
 
-`./tuv-x examples/full_config.json`.
-
+```
+# to use the standalone tool
+./tuv-x examples/tuv_5_4.json
+# or 
+./tuv-x examples/ts1_tsmlt.json
+```
 Inspect the output file `photolysis_rate_constants.nc` to see the results!
 
 ## Install

etc/derecho/README.md

@@ -1,5 +1,6 @@
 # Building TUV-x on Derecho 
 
+
 ## Get the source code
 
 - Copy the build script you wish to use from this folder to GLADE.
@@ -22,6 +23,7 @@ export TUVX_HOME=/path/to/my-tuvx-build
 ## Build TUV-x
 
 Replace `/path/to/build_tuvx_derecho_X.sh` with the path to the build script you copied to GLADE, in the following:
+> NOTE: Some test cases fail to build with the intel compiler.   
 
 ```
 cd $TUVX_HOME
@@ -45,6 +47,8 @@ make test
 
 ```
 cd $TUVX_HOME/tuv-x/build
-./tuv-x examples/full_config.json
+./tuv-x examples/tuv_5_4.json
+# or 
+./tuv-x examples/ts1_tsmlt.json
 ```
 

etc/derecho/build_tuvx_derecho_gnu.sh

@@ -3,7 +3,6 @@
 # The TUVX_HOME environment variable must be set to the directory to build TUV-x
 # in prior to calling this script
 
-
 module purge
 module load ncarenv/23.09
 module load craype/2.7.20
@@ -13,6 +12,7 @@ module load netcdf/4.9.2
 module load ncarcompilers/1.0.0
 module load cmake/3.26.3
 
+
 if [[ -z "${TUVX_HOME}" ]]; then
   echo "You must set the TUVX_HOME environment variable to the directory where TUV-x should be build."
   return
@@ -23,29 +23,12 @@ if [[ ! -d "${TUVX_HOME}" ]]; then
   return
 fi
 
-echo "Building JSON Fortran"
-
-# get & build the source code of JSON Fortran
-
-cd ${TUVX_HOME}
-curl -LO https://github.com/jacobwilliams/json-fortran/archive/8.3.0.tar.gz
-tar -zxvf 8.3.0.tar.gz
-cd json-fortran-8.3.0
-mkdir build
-cd build
-INSTALL_DIR=$TUVX_HOME/json-fortran-8.3.0
-cmake -D SKIP_DOC_GEN:BOOL=TRUE -D CMAKE_INSTALL_PREFIX=$INSTALL_DIR ..
-make install
-
-echo "Building TUV-x"
-
-# get & build the source code of TUV-x
-
+# download and build TUV-X
+echo "Downloading and Building TUV-x"
 cd ${TUVX_HOME}
 git clone [email protected]:NCAR/tuv-x.git
 cd tuv-x
 mkdir build
 cd build
-export JSON_FORTRAN_HOME=$INSTALL_DIR/jsonfortran-gnu-8.3.0
-cmake -D CMAKE_BUILD_TYPE=release -D TUVX_ENABLE_MEMCHECK=OFF -D LAPACK_LIBRARIES=-lsci_gnu ..   
+cmake -D CMAKE_BUILD_TYPE=release -D TUVX_ENABLE_MEMCHECK=OFF -D LAPACK_LIBRARIES=-lsci_gnu -D BLAS_LIBRARIES=-lsci_gnu ..   
 make -j 8

etc/derecho/build_tuvx_derecho_intel.sh

@@ -21,24 +21,8 @@ if [[ ! -d "${TUVX_HOME}" ]]; then
   return
 fi
 
-echo "Building JSON Fortran"
-
-# get & build the source code of JSON Fortran
-
-cd ${TUVX_HOME}
-curl -LO https://github.com/jacobwilliams/json-fortran/archive/8.3.0.tar.gz
-tar -zxvf 8.3.0.tar.gz
-cd json-fortran-8.3.0
-mkdir build
-cd build
-INSTALL_DIR=$TUVX_HOME/json-fortran-8.3.0
-cmake -D SKIP_DOC_GEN:BOOL=TRUE -D CMAKE_INSTALL_PREFIX=$INSTALL_DIR ..
-make install
-
-echo "Building TUV-x"
-
 # get & build the source code of TUV-x
-
+echo "Downloading and Building TUV-x"
 cd ${TUVX_HOME}
 git clone [email protected]:NCAR/tuv-x.git
 cd tuv-x