Changes for CLM lake to work in CCPP SCM

.gitmodules

@@ -4,8 +4,8 @@
 	branch = main
 [submodule "ccpp-physics"]
 	path = ccpp/physics
-	url = https://github.com/NCAR/ccpp-physics
-	branch = main
+	url = https://github.com/dustinswales/ccpp-physics
+	branch = hotfix/clmlake_in_scm
 [submodule "CMakeModules"]
 	path = CMakeModules
 	url = https://github.com/noaa-emc/CMakeModules

scm/src/scm_type_defs.F90

@@ -1082,10 +1082,7 @@ subroutine physics_set(physics, scm_input, scm_state)
         call conditionally_set_var(scm_input%input_elvmax,    physics%Sfcprop%hprime(i,14), "elvmax",    .true., missing_var(14))
         call conditionally_set_var(scm_input%input_oro,       physics%Sfcprop%oro(i),       "oro",       .true., missing_var(15))
         call conditionally_set_var(scm_input%input_oro_uf,    physics%Sfcprop%oro_uf(i),    "oro_uf",    (physics%Model%do_ugwp .and. physics%Model%nmtvr == 14), missing_var(16))
-        call conditionally_set_var(scm_input%input_landfrac,  physics%Sfcprop%landfrac(i),  "landfrac",  physics%Model%frac_grid, missing_var(17))
-        call conditionally_set_var(scm_input%input_lakefrac,  physics%Sfcprop%lakefrac(i),  "lakefrac",  (physics%Model%lkm == 1), missing_var(18))
-        call conditionally_set_var(scm_input%input_lakedepth, physics%Sfcprop%lakedepth(i), "lakedepth", (physics%Model%lkm == 1), missing_var(19))
-
+
         n = 19
         if ( i==1 .and. ANY( missing_var(1:n) ) ) then
           write(0,'(a)') "INPUT CHECK: Some missing input data was found related to (potentially non-required) orography and gravity wave drag parameters. This may lead to crashes or other strange behavior."
@@ -1097,6 +1094,20 @@ subroutine physics_set(physics, scm_input, scm_state)
         missing_var = .false.
       end if
 
+      ! Variables found in orographic dataset but needed for non-orographic reasons (e.g. lake model, fractional grid)
+      call conditionally_set_var(scm_input%input_landfrac,  physics%Sfcprop%landfrac(i),  "landfrac",  physics%Model%frac_grid, missing_var(1))
+      call conditionally_set_var(scm_input%input_lakefrac,  physics%Sfcprop%lakefrac(i),  "lakefrac",  (physics%Model%lkm == 1), missing_var(2))
+      call conditionally_set_var(scm_input%input_lakedepth, physics%Sfcprop%lakedepth(i), "lakedepth", (physics%Model%lkm == 1), missing_var(3))
+      n = 3
+      if ( i==1 .and. ANY( missing_var(1:n) ) ) then
+        write(0,'(a)') "INPUT CHECK: Some missing input data was found related to (potentially non-required) lake-related or fractional grid-related variables. This may lead to crashes or other strange behavior."
+        write(0,'(a)') "Check scm_type_defs.F90/physics_set to see the names of variables that are missing, corresponding to the following indices:"
+        do j=1, n
+          if (missing_var(j)) write(0,'(a,i0)') "variable index ",j
+        end do
+      end if
+      missing_var = .false.
+
       !
       ! Surface data (2D)
       !
@@ -1203,7 +1214,7 @@ subroutine physics_set(physics, scm_input, scm_state)
       ! Derive physics quantities using surface model ICs.
       !
       if(scm_state%model_ics .or. scm_state%lsm_ics) then
-        if (physics%Sfcprop%stype(i) == 14 .or.  physics%Sfcprop%stype(i)+0.5 <= 0) then
+        if (physics%Sfcprop%stype(i) == 14 .or.  physics%Sfcprop%stype(i) <= 0) then
           physics%Sfcprop%landfrac(i) = real_zero
           physics%Sfcprop%stype(i) = 0
           if (physics%Sfcprop%lakefrac(i) > real_zero) then