Removing bacio and sp depedency

.github/workflows/ci_build_scm_ubuntu_22.04.yml

@@ -17,7 +17,6 @@ jobs:
     env:
       NFHOME:     /home/runner/netcdf-fortran
       NFVERSION:  v4.5.3
-      bacio_ROOT: /home/runner/bacio
       sp_ROOT:    /home/runner/NCEPLIBS-sp
       SCM_ROOT:   /home/runner/work/ccpp-scm/ccpp-scm
       intel_ROOT: /home/runner/intel
@@ -84,23 +83,6 @@ jobs:
         sudo apt-get install intel-hpckit-getting-started intel-oneapi-clck intel-oneapi-common-licensing intel-oneapi-common-vars
         sudo apt-get install intel-oneapi-dev-utilities  intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic intel-oneapi-compiler-fortran intel-oneapi-itac
 
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

.github/workflows/ci_build_scm_ubuntu_22.04_nvidia.yml

@@ -17,7 +17,6 @@ jobs:
     # Environmental variables
     env:
       NETCDF:      /home/runner/netcdf
-      bacio_ROOT:  /home/runner/bacio
       sp_ROOT:     /home/runner/NCEPLIBS-sp
       SCM_ROOT:    /home/runner/work/ccpp-scm/ccpp-scm
       zlib_ROOT:   /home/runner/zlib
@@ -184,23 +183,6 @@ jobs:
         make
         make install
 
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

.github/workflows/ci_run_scm_DEPHY.yml

@@ -16,7 +16,6 @@ jobs:
     env:
       NFHOME:     /home/runner/netcdf-fortran
       NFVERSION:  v4.5.3
-      bacio_ROOT: /home/runner/bacio
       sp_ROOT:    /home/runner/NCEPLIBS-sp
       SCM_ROOT:   /home/runner/work/ccpp-scm/ccpp-scm
       suites:     SCM_GFS_v16,SCM_GFS_v16_ps
@@ -53,23 +52,6 @@ jobs:
     #######################################################################################
     # Install FORTRAN dependencies
     #######################################################################################
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

.github/workflows/ci_run_scm_rts.yml

@@ -17,7 +17,6 @@ jobs:
     env:
       NFHOME:     /home/runner/netcdf-fortran
       NFVERSION:  v4.5.3
-      bacio_ROOT: /home/runner/bacio
       sp_ROOT:    /home/runner/NCEPLIBS-sp
       SCM_ROOT:   /home/runner/work/ccpp-scm/ccpp-scm
       suites:     SCM_GFS_v15p2,SCM_GFS_v16,SCM_GFS_v17_p8,SCM_HRRR,SCM_RRFS_v1beta,SCM_RAP,SCM_WoFS_v0
@@ -70,23 +69,6 @@ jobs:
         echo "CC=icx"         >> $GITHUB_ENV
         echo "FC=ifort"       >> $GITHUB_ENV
 
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

docker/Dockerfile

@@ -49,7 +49,7 @@ RUN mkdir -p $NCEPLIBS_DIR/src && cd $NCEPLIBS_DIR/src \
   && mkdir NCEPLIBS-bacio/build && cd NCEPLIBS-bacio/build \
   && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \
   && make VERBOSE=1 \
-  && make install 
+  && make install
 
 RUN cd $NCEPLIBS_DIR/src \
   && git clone -b v2.3.3 --recursive https://github.com/NOAA-EMC/NCEPLIBS-sp \
@@ -82,7 +82,7 @@ RUN cd /comsoftware \
   && make -j4
 
 # The analysis scripts have options for using LaTeX when making figure labels.
-# If you would like to install LaTeK, uncomment the section below. 
+# If you would like to install LaTeK, uncomment the section below.
 # Note: This will increase the image size by 1 GB.
 #USER root
 #RUN yum -y update \

scm/doc/TechGuide/chap_quick.rst

@@ -123,7 +123,7 @@ System Requirements, Libraries, and Tools
 The source code for the SCM and CCPP components is in the form of
 programs written in FORTRAN 90 (with some required features from the
 FORTRAN 2008 standard), and C. In addition, the model I/O
-relies on the NetCDF libraries, as well as the NCEP libraries ``bacio``, ``sp`` and ``w3emc``.
+relies on the NetCDF libraries.
 
 Beyond the standard shell scripts, the build
 system relies on use of the Python scripting language, along with cmake,
@@ -233,9 +233,9 @@ or ``linux_gnu`` modules.
 
 If libraries were installed manually, users will need to set some environment variables
 needed for specifying the location of the various prerequisites. Users will need to set variables for the
-compilers (``CC``, ``CXX``, ``FC``), as well as the root directories for the library installs of NetCDF (``NetCDF_ROOT``),
-``bacio`` (``bacio_ROOT``), ``sp`` (``sp_ROOT``), and ``w3emc`` (``w3emc_ROOT``). This is the procedure used in the
-provided Dockerfile in ``ccpp-scm/docker/``, so users can reference that file for guidance on how to install this software
+compilers (``CC``, ``CXX``, ``FC``), as well as the root directories for the library installs of NetCDF (``NetCDF_ROOT``).
+This is the procedure used in the provided Dockerfile in ``ccpp-scm/docker/``,
+so users can reference that file for guidance on how to install this software
 and set these variables.
 
 

scm/doc/TechGuide/chap_repo.rst

@@ -76,8 +76,8 @@ Continuous Integration
 The CCPP SCM GitHub repository is set up with Continuous Integration (CI) testing for building the SCM and running some simple test cases. These tests are run automatically on code changes before they are merged, and so ensures that new changes to the SCM do not break basic capabilities. The latest set of tests use the following combinations of SCM prerequisites:
 
 **Regression tests**
- - GNU compilers 11.4.0, Python 3.9.12, netCDF-c 4.7.3, netCDF-FORTRAN 4.5.3, bacio 2.4.1, sp 2.3.3, and w3emc 2.9.2
+ - GNU compilers 11.4.0, Python 3.9.12, netCDF-c 4.7.3, and netCDF-FORTRAN 4.5.3
 
 **Build tests**
 
-All tests use the same versions of NCEP-supported libraries: bacio 2.4.1, sp 2.3.3, and w3emc 2.9.2. Detailed information on these tests can be found in the definition files for these tests, stored in the SCM repository under ``ccpp-scm/.github/workflows``.
+Detailed information on these tests can be found in the definition files for these tests, stored in the SCM repository under ``ccpp-scm/.github/workflows``.

scm/etc/modules/derecho_gnu.lua

@@ -20,8 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpicc")
 setenv("CMAKE_CXX_COMPILER","mpicxx")

scm/etc/modules/derecho_intel.lua

@@ -20,8 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","cc")
 setenv("CMAKE_CXX_COMPILER","CC")

scm/etc/modules/hera_gnu.lua

@@ -20,8 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpicc")
 setenv("CMAKE_CXX_COMPILER","mpicxx")

scm/etc/modules/hera_intel.lua

@@ -19,8 +19,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpiicc")
 setenv("CMAKE_CXX_COMPILER","mpiicpc")

scm/etc/modules/jet_gnu.lua

@@ -21,8 +21,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpicc")
 setenv("CMAKE_CXX_COMPILER","mpicxx")

scm/etc/modules/jet_intel.lua

@@ -21,8 +21,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpiicc")
 setenv("CMAKE_CXX_COMPILER","mpiicpc")

scm/etc/modules/linux_gnu.lua

@@ -23,11 +23,6 @@ load("netcdf-fortran/4.6.1")
 load("py-f90nml/1.4.3")
 load("py-netcdf4/1.5.8")
 
-
-load("bacio/2.4.1")
-load("sp/2.5.0")
-load("w3emc/2.10.0")
-
 setenv("CMAKE_C_COMPILER","mpicc")
 setenv("CMAKE_CXX_COMPILER","mpicxx")
 setenv("CMAKE_Fortran_COMPILER","mpif90")

scm/etc/modules/macos_clang.lua

@@ -21,11 +21,6 @@ load("netcdf-fortran/4.6.1")
 load("py-f90nml/1.4.3")
 load("py-netcdf4/1.5.8")
 
-
-load("bacio/2.4.1")
-load("sp/2.5.0")
-load("w3emc/2.10.0")
-
 setenv("CMAKE_C_COMPILER","clang")
 setenv("CMAKE_CXX_COMPILER","clang++")
 setenv("CMAKE_Fortran_COMPILER","gfortran-12")

scm/etc/modules/orion_gnu.lua

@@ -20,8 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpicc")
 setenv("CMAKE_CXX_COMPILER","mpicxx")

scm/etc/modules/orion_intel.lua

@@ -20,8 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
-load("sp/2.3.3")
 
 setenv("CMAKE_C_COMPILER","mpiicc")
 setenv("CMAKE_CXX_COMPILER","mpiicpc")

scm/src/CMakeLists.txt

@@ -68,8 +68,6 @@ include(CMakeForceCompiler)
 SET(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_SOURCE_DIR}/../../CMakeModules/Modules)
 
 find_package(NetCDF REQUIRED COMPONENTS C Fortran)
-find_package(bacio REQUIRED)
-find_package(sp    REQUIRED)
 
 SET(CCPP_FRAMEWORK_SRC ${CMAKE_SOURCE_DIR}/../../ccpp/framework)
 SET(CCPP_PHYSICS_SRC ${CMAKE_SOURCE_DIR}/../../ccpp/physics)
@@ -276,8 +274,6 @@ if(OPENMP)
   TARGET_LINK_LIBRARIES(scm PUBLIC OpenMP::OpenMP_Fortran)
 endif()
 TARGET_LINK_LIBRARIES(scm NetCDF::NetCDF_Fortran)
-TARGET_LINK_LIBRARIES(scm bacio::bacio_4)
-TARGET_LINK_LIBRARIES(scm sp::sp_d)
 TARGET_LINK_LIBRARIES(scm ccpp_framework)
 TARGET_LINK_LIBRARIES(scm ccpp_physics)