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Update jupyter.sh, one line command
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carlos-encs authored May 3, 2024
1 parent 9f8b57a commit 682c55f
Showing 1 changed file with 2 additions and 5 deletions.
7 changes: 2 additions & 5 deletions src/jupyter.sh
Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,7 @@
module load singularity/3.10.4/default

# Executing singularity image
srun singularity exec -B $PWD\:/speed-pwd,/speed-scratch/$USER\:/my-speed-scratch,/nettemp \
--env SHELL=/bin/bash --nv /speed-scratch/nag-public/jupyter-pytorch-cuda.sif \
/bin/bash -c '/opt/conda/bin/jupyter notebook --no-browser --notebook-dir=/speed-pwd \
--ip="*" --port=8888 --allow-root'
srun singularity exec -B $PWD\:/speed-pwd,/speed-scratch/$USER\:/my-speed-scratch,/nettemp --env SHELL=/bin/bash --nv /speed-scratch/nag-public/jupyter-pytorch-cuda.sif /bin/bash -c '/opt/conda/bin/jupyter notebook --no-browser --notebook-dir=/speed-pwd --ip="0.0.0.0" --port=8888 --allow-root'

## If you receive an error like: FATAL:container creation failed: exec: "/usr/bin/nvidia-container-cli"
## remove the parameter: --nv and execute again srun singularity ...
Expand All @@ -22,4 +19,4 @@ srun singularity exec -B $PWD\:/speed-pwd,/speed-scratch/$USER\:/my-speed-scratc
## [I 09:10:49.547 NotebookApp] or http://127.0.0.1:8888/?token=xxxxxxxxxxxxxxxxxxxx
## [I 09:10:49.547 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).

# Continue with the ssh tunnel creation as described in: https://nag-devops.github.io/speed-hpc/#jupyter-notebooks
# Continue with the ssh tunnel creation as described in: https://nag-devops.github.io/speed-hpc/#jupyter-notebooks

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