Changing the instructions to point at our web pages... so we're not m…

…aintaining instructions in two places.

Configuration Instructions.txt

@@ -1,49 +1,2 @@
-Once the Model SEED has been successfully installed, you must configure it to your running environment, and you must install the data associated with the Model SEED
-1.) Customize the Model SEED configuration file
-	a.) Copy the default configuration file Model-SEED-core/config/Settings.config to a new filename (e.g. MyModelSEED.config):
-	b.) Edit you new configuration file filling in the following parameters (ignore the others for now):
-		[Optional]
-		SeedUsername=(your SEED account username)
-		SeedPassword=(your SEED account password)
-		dataDirectory=(location where your extracted the Model SEED flatfiles in step 1)
-		[Optimizers]
-		directoryGLPK=(location where glpk has been installed on your system)
-		includeDirectoryCPLEX=(location where cplex include files are located if you have cplex, leave commented otherwise)
-		libraryDirectoryCPLEX=(location where cplex library files are located if you have cplex, leave commented otherwise)
-		licenceDirectoryCPLEX=(location of cplex license file if you have cplex, leave commented otherwise)
-2.) Decide upon the database backend: either MySQL or SQL-lite
-	a.) The Model SEED can use two different database implementations to store the relational database that comes with the Model SEED
-		-MySQL: a heavy weight implementation with a separate installation that provides enhanced performance for heavy-duty use
-		-SQL-lite: a light weight implementation built into Model SEED, requiring no effort to install or configure, but delivering reduced performance
-	b.) By default, Model SEED assumes an SQL-lite database backend because this provides us with an easier installation process. If you're using SQL-lite, JUMP TO STEP (4)
-	c.) If you're using MySQL, JUMP TO STEP (3)
-3.) Install and load MySQL database
-	a.) Set up an SQL server on your computer or identify a server with SQL that you have access to
-	b.) Create or identify a user account in the SQL server that Model SEED can use to interact with the server, and give this user account privileges to make schemes.
-	c.) Adjust database parameters in config file
-		[Database]
-		# type is either sqlite or mysql
-		type=(set this to "mysql")
-		# required for mysql
-		username=(set to username for Model SEED account in MySQL database)
-		password=(set to password for Model SEED account in MySQL database, leave commented if no password)
-		host=(set to host location of computer where database is hosted, "localhost" if on local machine)
-		socket=(points to location of MySQL ".sock" file) (on OSX it is usually /tmp/mysql.sock)
-		port=(set to port for MySQL database, defaults to 3306 if left commented)
-	d.) Run this command: Model-SEED-core/bin/ms-config load "Name of your config file that you filled out in steps 2.b and 3.c"
-	e.) Run this script: Model-SEED-core/bin/CreateDBScheme
-	f.) If you're having trouble getting this script to run, remember you need to install the MySQL development headers/libraries as well as the standard installation.
-	g.) Make sure your user account has privileges to view and modify the ModelDB scheme.
-	h.) Should run with no errors.
-	i.) Download the default database content from here:
-	http://bioseed.mcs.anl.gov/~chenry/sql.tgz
-	j.) Extract the SQL file, and import it into the "ModelDB" scheme created in step 3.e
-4.) Set up MySQL database backend 
-	a.) Download sqllite file http://bioseed.mcs.anl.gov/~devoid/ModelDB-sqlite.tgz
-	b.) Extract to the Model-SEED-core/data/ directory
-	c.) Load SQL-lite database from file:
-	sqlite3 Model-SEED-core/data/ModelDB/ModelDB.db < Model-SEED-core/data/ModelDB/ModelDB.sqlite;
-	d.) Delete the ModelDB.sqlite file
-	e.) Run this command: Model-SEED-core/bin/ms-config load "Name of your config file that you filled out in steps 2.b and 4.b"
-5.) Test the Model SEED
-	a.) Run this command: Model-SEED-core/bin/ModelDriver
+See instructions at:
+http://bionet.mcs.anl.gov/index.php/Configuring_the_Model_SEED_Distribution

Linux and OSX Installation Instructions.txt

@@ -1,13 +1,3 @@
-1.) Make sure that git is installed on your computer
-2.) Ensure that the following perl libraries are installed
-	a.) File/Copy/Recursive
-	b.) Spreadsheet/WriteExcel
-	c.) XML/DOM
-	d.) YAML
-	e.) DBD/mysql
-3.) Run the following commands in bash to download and install the Model SEED:
-curl https://raw.github.com/ModelSEED/Model-SEED-core/master/lib/ModelSEED/ModelSEEDScripts/bootstrap.sh > bootstrap.sh
-chmod +x bootstrap.sh 
-./bootstrap.sh "path to location where Model SEED should be installed"
-4.) Open the file, "Configuration Instructions" located in the ModelSEED installation directory, and follow these instructions
+See instructions at:
+http://bionet.mcs.anl.gov/index.php/Installing_the_Model_SEED_Distribution