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@MillerLab-CPHG

Miller Lab @ UVA

Cardiovascular genomics related repositories from the Miller Lab in the Center for Public Health Genomics at UVA

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  1. PlaqView PlaqView Public

    This is a standalone interactive Shiny tool to analyze and explore single-cell RNA-seq data from human coronary artery.

    R 7 5

Repositories

Showing 10 of 20 repositories
  • scRNAutils Public

    This repo contains code for automating processing of scRNA libraries and other useful functions

    MillerLab-CPHG/scRNAutils’s past year of commit activity
    R 10 3 3 0 Updated Sep 5, 2024
  • PlaqView Public

    This is a standalone interactive Shiny tool to analyze and explore single-cell RNA-seq data from human coronary artery.

    MillerLab-CPHG/PlaqView’s past year of commit activity
    R 7 Apache-2.0 5 0 0 Updated Jul 30, 2024
  • Dockerfile_Plaqview Public

    This repo contains the dockerfile(s) to accurately reproduce the environment to analyze plaqview data and develop the plaqview shiny app

    MillerLab-CPHG/Dockerfile_Plaqview’s past year of commit activity
    Dockerfile 0 MIT 0 0 0 Updated Jan 31, 2024
  • Human_athero_scRNA_meta Public

    This repo contains scripts used for the Human Atherosclerosis scRNA-seq meta-analysis project.

    MillerLab-CPHG/Human_athero_scRNA_meta’s past year of commit activity
    Jupyter Notebook 7 2 3 0 Updated Oct 8, 2023
  • toy_iSEE_instance Public

    This repo has code to build a small iSEE app for docker image testing purposes.

    MillerLab-CPHG/toy_iSEE_instance’s past year of commit activity
    R 0 1 0 0 Updated Oct 3, 2023
  • Fine_mapping Public

    This repository contains scripts used for fine-mapping GWAS locus using eQTL prioritization methods, including Summary-based Mendelian Randomization (SMR) and coloc based colocalization.

    MillerLab-CPHG/Fine_mapping’s past year of commit activity
    R 5 3 0 0 Updated Aug 16, 2023
  • PlaqView_DataProcessing Public

    This is just the directory and scripts for processing the raw recruited datasets

    MillerLab-CPHG/PlaqView_DataProcessing’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Jul 25, 2023
  • CAD_QTL Public
    MillerLab-CPHG/CAD_QTL’s past year of commit activity
    R 2 CC0-1.0 0 0 0 Updated Mar 15, 2023
  • PlaqView_ATAC Public

    Central Repo for the PlaqView single-cell ATAC-seq portal.

    MillerLab-CPHG/PlaqView_ATAC’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated May 24, 2022
  • Ma_2020 Public

    Comprehensive single-cell RNA seq analysis workflow: automatic cell labeling to drug discovery and repurposing. Work from UVA CPHG Miller Lab.

    MillerLab-CPHG/Ma_2020’s past year of commit activity
    R 3 1 0 0 Updated Apr 29, 2022
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