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| www.shapeworks-cloud.org |
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| { | ||
| "id": "groom", | ||
| "type": "object", | ||
| "description": "Pre-process and prepare input data for the optimization process", | ||
| "properties": { | ||
| "section_1": { | ||
| "title": "Mesh Grooming", | ||
| "type": "object", | ||
| "properties": { | ||
| "fill_mesh_holes": { | ||
| "type": "boolean", | ||
| "default": true, | ||
| "title": "Fill Holes", | ||
| "x-display": "custom-conditional", | ||
| "description": "Fill small holes in the mesh" | ||
| }, | ||
| "mesh_smooth": { | ||
| "type": "boolean", | ||
| "default": true, | ||
| "title": "Smooth", | ||
| "x-display": "custom-conditional", | ||
| "description": "Enable mesh smoothing" | ||
| }, | ||
| "mesh_smoothing_method": { | ||
| "type": "string", | ||
| "enum": [ | ||
| "Laplacian", | ||
| "WindowedSinc" | ||
| ], | ||
| "default": "Laplacian", | ||
| "title": "Smoothing Method", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.mesh_smooth", | ||
| "description": "Mesh smoothing type: Laplacian or Windowed Sinc" | ||
| }, | ||
| "mesh_smoothing_vtk_laplacian_iterations": { | ||
| "type": "integer", | ||
| "default": 10, | ||
| "title": "Iterations", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.mesh_smoothing_method === 'Laplacian'", | ||
| "x-cols": 6, | ||
| "description": "Number of iterations of laplacian smoothing. More iterations provides more smoothing." | ||
| }, | ||
| "mesh_smoothing_vtk_laplacian_relaxation": { | ||
| "type": "integer", | ||
| "default": 1, | ||
| "title": "Relaxation", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.mesh_smoothing_method === 'Laplacian'", | ||
| "x-cols": 6, | ||
| "description": "Relaxation controls the amount of smoothing in each iteration." | ||
| }, | ||
| "mesh_smoothing_vtk_windowed_sinc_iterations": { | ||
| "type": "integer", | ||
| "default": 10, | ||
| "title": "Iterations", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.mesh_smoothing_method === 'WindowedSinc'", | ||
| "x-cols": 6, | ||
| "description": "Number of iterations of windowed sinc smoothing. More iterations provides more smoothing." | ||
| }, | ||
| "mesh_smoothing_vtk_windowed_sinc_passband": { | ||
| "type": "number", | ||
| "default": 0.05, | ||
| "title": "Pass Band", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.mesh_smoothing_method === 'WindowedSinc'", | ||
| "x-cols": 6, | ||
| "description": "Passband parameter alters how much smoothing each iteration performs." | ||
| }, | ||
| "remesh": { | ||
| "type": "boolean", | ||
| "default": true, | ||
| "title": "Remesh", | ||
| "x-display": "custom-conditional", | ||
| "x-cols": 6, | ||
| "description": "Enable remeshing to create a more uniform adaptive mesh. Also fixes many mesh problems" | ||
| }, | ||
| "remesh_percent_mode": { | ||
| "type": "boolean", | ||
| "default": true, | ||
| "title": "Use percentage", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.remesh", | ||
| "x-cols": 6, | ||
| "description": "Check this box to set the number of vertices based on a percentage of the mesh's current number of vertices" | ||
| }, | ||
| "remesh_percent": { | ||
| "type": "number", | ||
| "default": 75.0, | ||
| "title": "Percentage of vertices", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.remesh && model.section_1.remesh_percent_mode", | ||
| "description": "Set the target number of vertices as a percentage of the current number of vertices" | ||
| }, | ||
| "remesh_num_vertices": { | ||
| "type": "integer", | ||
| "default": 3000, | ||
| "title": "Number of vertices", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.remesh && !model.section_1.remesh_percent_mode", | ||
| "description": "Set the desired number of vertices directly" | ||
| }, | ||
| "remesh_gradation": { | ||
| "type": "number", | ||
| "default": 1, | ||
| "title": "Adaptivity", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_1.remesh", | ||
| "description": "Curvature adaptivity of remeshing (0 = uniform, 2.0 most adaptive). This allocates more triangles/vertices to areas of higher curvature" | ||
| } | ||
| } | ||
| }, | ||
| "section_2": { | ||
| "title": "Alignment Options", | ||
| "type": "object", | ||
| "properties": { | ||
| "reflect": { | ||
| "type": "boolean", | ||
| "default": false, | ||
| "title": "Reflect", | ||
| "description": "Option to reflect some shapes over a given axis if a given column matches a given value (e.g. reflect 'side' over 'Y' if 'left')" | ||
| }, | ||
| "reflect_column": { | ||
| "type": "string", | ||
| "enum": [ | ||
| "shape_1", "groomed_1", "alignment_1", | ||
| "procrustes_1", "local_particles_1", "world_particles_1" | ||
| ], | ||
| "default": "shape_1", | ||
| "x-cols": 6, | ||
| "x-display": "custom-conditional", | ||
| "x-display-if":"(model) => model.section_2.reflect", | ||
| "description": "Choice of spreadsheet column to determine which subjects should be reflected" | ||
| }, | ||
| "reflect_axis": { | ||
| "type": "string", | ||
| "enum": [ | ||
| "X", "Y", "Z" | ||
| ], | ||
| "default": "X", | ||
| "x-cols": 6, | ||
| "x-display": "custom-conditional", | ||
| "x-display-if":"(model) => model.section_2.reflect", | ||
| "description": "Axis of reflection" | ||
| }, | ||
| "alignment_enabled": { | ||
| "type": "boolean", | ||
| "default": true, | ||
| "title": "Alignment", | ||
| "x-cols": 6, | ||
| "description": "Enable/Disable alignment" | ||
| }, | ||
| "alignment_method": { | ||
| "type": "string", | ||
| "default": "Center", | ||
| "title": "Align", | ||
| "x-cols": 6, | ||
| "enum": [ | ||
| "Center", | ||
| "Iterative Closest Point", | ||
| "Landmark" | ||
| ], | ||
| "x-class": "float-right pl-5", | ||
| "x-display": "custom-conditional", | ||
| "x-display-if": "(model) => model.section_2.alignment_enabled", | ||
| "description": "Option to align with centering (center of mass), iterative closest point (translation and rotation), or landmarks (best fit, when specified)" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
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