Unit tests #126
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| # Workflow based on https://github.com/actions/starter-workflows/blob/main/ci/python-package.yml | |
| name: Unit tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 9 * * 1,3,5" | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.python-version }}; rpy2 ${{ matrix.config.rpy2 }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: 'ubuntu-20.04', python-version: '3.7', rpy2: 'true'} | |
| - {os: 'ubuntu-latest', python-version: '3.8', rpy2: 'true'} | |
| - {os: 'ubuntu-latest', python-version: '3.8', rpy2: 'false'} | |
| - {os: 'windows-latest', python-version: '3.8', rpy2: 'false'} | |
| - {os: 'macOS-latest', python-version: '3.8', rpy2: 'true'} | |
| - {os: 'ubuntu-latest', python-version: '3.9', rpy2: 'true'} | |
| - {os: 'ubuntu-latest', python-version: '3.10', rpy2: 'true'} | |
| # - {os: 'ubuntu-latest', python-version: '3.11', rpy2: 'true'} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up Python ${{ matrix.config.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.config.python-version }} | |
| - name: Install vineknockoffs and dependencies | |
| run: | | |
| pip install --editable . | |
| pip install pytest | |
| - name: Set up R | |
| if: matrix.config.rpy2 == 'true' | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install R packages | |
| if: matrix.config.rpy2 == 'true' | |
| run: | | |
| install.packages(c('glmnet', 'kde1d', 'TSP', 'VineCopula')) | |
| shell: Rscript {0} | |
| - name: Install rpy2 | |
| if: matrix.config.rpy2 == 'true' | |
| run: | | |
| pip install rpy2 | |
| - name: Test with pytest | |
| if: | | |
| matrix.config.os != 'ubuntu-latest' || | |
| matrix.config.python-version != '3.8' || | |
| matrix.config.rpy2 == 'false' | |
| run: | | |
| pytest | |
| - name: Test with pytest and coverage | |
| if: | | |
| matrix.config.os == 'ubuntu-latest' && | |
| matrix.config.python-version == '3.8' && | |
| matrix.config.rpy2 == 'true' | |
| run: | | |
| pip install pytest-cov | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| if: | | |
| matrix.config.os == 'ubuntu-latest' && | |
| matrix.config.python-version == '3.8' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests |