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Update README.md
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MaestSi authored Dec 18, 2019
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Expand Up @@ -215,7 +215,8 @@ The **MetatONTrack.sh** script reproduces what the EPI2ME 16S workflow does, bla

Usage: MetatONTrack.sh \<fastq reads\> \<min num reads\>

Note: set _BLASTN_, _SEQTK_ and _DB_ variables to blastn, seqtk executables and to an NCBI Blast-indexed database respectively inside the script; if using NCBI nt database, change _cut -d" " -f2,3_ (line 47) and _cut -d" " -f2_ (line 48) to _cut -d" " -f1,2_ and _cut -d" " -f1_ respectively
Note: Activate the virtual environment with ```source activate ONTrack_env``` before running.
Set _DB_ variable to an NCBI Blast-indexed database inside the script; if using NCBI nt database, change _cut -d" " -f2,3_ (line 47) and _cut -d" " -f2_ (line 48) to _cut -d" " -f1,2_ and _cut -d" " -f1_ respectively

Inputs:
* \<fastq reads\>: MinION fastq reads from a meta-barcoding experiment
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