Update Calculate_error_rate.sh

MaestSi · Dec 18, 2019 · 906186b · 906186b
1 parent c41fcac
commit 906186b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/Calculate_error_rate.sh b/Calculate_error_rate.sh
@@ -19,8 +19,8 @@
 READS=$1
 REFERENCE=$2
 
-MINIMAP2=/path/to/minimap2
-SAMTOOLS=/path/to/samtools
+MINIMAP2=minimap2 #specify full path if you want to use a version of the program which is not in your PATH
+SAMTOOLS=samtools #specify full path if you want to use a version of the program which is not in your PATH
 
 SAMPLE_NAME=$(echo $(basename $READS) | sed 's/\.fast.//g')
 WORKING_DIR=$(dirname $(realpath $READS))